Variant report

Variant	rs13192070
Chromosome Location	chr6:86390709-86390710
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13194512	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs16876385	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1793	0.82[ASN][1000 genomes]
rs34936540	0.82[ASN][1000 genomes]
rs36088473	0.82[ASN][1000 genomes]
rs3900740	0.82[ASN][1000 genomes]
rs4707213	0.82[ASN][1000 genomes]
rs55648312	0.82[ASN][1000 genomes]
rs67493405	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6906121	0.82[ASN][1000 genomes]
rs6909402	0.81[ASN][1000 genomes]
rs7738371	0.82[ASN][1000 genomes]
rs7740830	0.82[ASN][1000 genomes]
rs7742792	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7766863	0.88[ASN][1000 genomes]
rs7771577	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022445	chr6:85972678-86392968	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv538349	chr6:85972678-86392968	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv886334	chr6:86214507-86394403	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
4	nsv1028293	chr6:86353958-86778912	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	100 gene(s)	inside rSNPs	diseases
5	nsv538350	chr6:86353958-86778912	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	100 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:86389600-86393200	Weak transcription	Psoas Muscle	Psoas
2	chr6:86390000-86392000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:86390400-86393800	Weak transcription	NHLF	lung
4	chr6:86390400-86394000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:86390400-86394200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:86390400-86395200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:86390600-86392800	Weak transcription	A549	lung
8	chr6:86390600-86392800	Enhancers	Dnd41	blood
9	chr6:86390600-86394600	Weak transcription	GM12878-XiMat	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links