Variant report

Variant	rs13192105
Chromosome Location	chr6:11737409-11737410
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11755870	1.00[CEU][hapmap]
rs11757650	0.80[CEU][hapmap]
rs13193682	0.80[CEU][hapmap];0.81[AFR][1000 genomes]
rs13201084	0.80[CEU][hapmap]
rs13210680	0.80[CEU][hapmap]
rs13215825	0.80[CEU][hapmap]
rs17480539	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67783297	0.97[EUR][1000 genomes]
rs760790	0.80[CEU][hapmap];0.83[YRI][hapmap]
rs9296142	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428470	chr6:11686198-11747850	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3396416	chr6:11734466-11738764	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11719400-11762200	Weak transcription	Colonic Mucosa	Colon
2	chr6:11723200-11738400	Weak transcription	HMEC	breast
3	chr6:11723600-11744200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:11725200-11748600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:11726400-11744600	Weak transcription	Right Atrium	heart
6	chr6:11732400-11744800	Weak transcription	Fetal Intestine Small	intestine
7	chr6:11732400-11750400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:11732600-11740000	Weak transcription	Psoas Muscle	Psoas
9	chr6:11732800-11738800	Weak transcription	Small Intestine	intestine
10	chr6:11732800-11750400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr6:11733000-11741400	Weak transcription	HSMM	muscle
12	chr6:11733400-11738400	Weak transcription	Adipose Nuclei	Adipose
13	chr6:11733600-11738200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:11733600-11738400	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr6:11734000-11738800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr6:11734600-11745000	Weak transcription	HSMMtube	muscle
17	chr6:11735200-11738400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:11735200-11738800	Enhancers	Pancreas	Pancrea
19	chr6:11735200-11744600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:11735600-11737800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:11735600-11738400	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr6:11735600-11738800	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr6:11735600-11743200	Weak transcription	Duodenum Mucosa	Duodenum
24	chr6:11735600-11754800	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr6:11735800-11738600	Enhancers	Gastric	stomach
26	chr6:11736000-11737600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:11736000-11737600	Enhancers	Esophagus	oesophagus
28	chr6:11736000-11741000	Weak transcription	GM12878-XiMat	blood
29	chr6:11736200-11744600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:11736200-11752400	Weak transcription	NHEK	skin
31	chr6:11736200-11754800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:11736600-11750600	Weak transcription	Stomach Mucosa	stomach
33	chr6:11736800-11738200	Enhancers	Fetal Muscle Trunk	muscle
34	chr6:11736800-11738800	Enhancers	Fetal Brain Male	brain
35	chr6:11737000-11738000	Enhancers	Fetal Muscle Leg	muscle
36	chr6:11737000-11739200	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr6:11737200-11737600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr6:11737200-11738800	Enhancers	Fetal Brain Female	brain
39	chr6:11737200-11739800	Weak transcription	K562	blood
40	chr6:11737400-11738000	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr6:11737400-11738000	Enhancers	Ovary	ovary
42	chr6:11737400-11739000	Enhancers	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links