Variant report

Variant	rs13194868
Chromosome Location	chr6:87956025-87956026
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:87953694..87956480-chr6:87964610..87967479,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2240461	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2274582	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2325046	0.82[ASN][1000 genomes]
rs2875533	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4706290	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4707349	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60992482	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7773715	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9444485	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9450624	0.82[AFR][1000 genomes]
rs9450629	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758067	chr6:87817883-87992957	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2759453	chr6:87817883-87992957	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13194868	C6orf162	Cis_1M	lymphoblastoid	RTeQTL
rs13194868	SLC35A1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:87884000-87964400	Weak transcription	NHEK	skin
2	chr6:87888200-87964200	Weak transcription	HSMMtube	muscle
3	chr6:87906200-87956200	Weak transcription	A549	lung
4	chr6:87906400-87964400	Weak transcription	NHLF	lung
5	chr6:87922200-87956200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:87923400-87956200	Weak transcription	Gastric	stomach
7	chr6:87923400-87956200	Weak transcription	Small Intestine	intestine
8	chr6:87923400-87969000	Weak transcription	Psoas Muscle	Psoas
9	chr6:87924000-87956200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr6:87924400-87966000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:87924600-87956200	Weak transcription	Right Ventricle	heart
12	chr6:87928000-87956200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr6:87933200-87956200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr6:87933600-87956200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr6:87933600-87956200	Weak transcription	Lung	lung
16	chr6:87933600-87956400	Weak transcription	Esophagus	oesophagus
17	chr6:87933800-87956200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr6:87933800-87956200	Weak transcription	Colonic Mucosa	Colon
19	chr6:87934000-87956200	Weak transcription	Left Ventricle	heart
20	chr6:87934000-87956400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:87934600-87964200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr6:87934600-87964400	Weak transcription	Brain Angular Gyrus	brain
23	chr6:87934600-87967000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr6:87934800-87956200	Weak transcription	Brain Anterior Caudate	brain
25	chr6:87934800-87956400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr6:87934800-87958600	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr6:87934800-87964200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr6:87935000-87956200	Weak transcription	HUVEC	blood vessel
29	chr6:87935200-87963400	Weak transcription	Hela-S3	cervix
30	chr6:87935200-87963600	Weak transcription	NHDF-Ad	bronchial
31	chr6:87935800-87956800	Weak transcription	Osteobl	bone
32	chr6:87936400-87961600	Weak transcription	Right Atrium	heart
33	chr6:87936800-87964200	Weak transcription	Fetal Brain Male	brain
34	chr6:87946000-87964400	Weak transcription	Fetal Heart	heart
35	chr6:87948200-87956200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr6:87948200-87961400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr6:87948800-87971200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:87949600-87961400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr6:87949600-87970200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr6:87949800-87958600	Strong transcription	Liver	Liver
41	chr6:87949800-87962000	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr6:87950200-87958800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr6:87950200-87960200	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr6:87950200-87960400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr6:87950200-87960400	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr6:87950200-87962600	Strong transcription	HUES48 Cell Line	embryonic stem cell
47	chr6:87950200-87967600	Strong transcription	Fetal Lung	lung
48	chr6:87950200-87968200	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr6:87950400-87956200	Strong transcription	Placenta	Placenta
50	chr6:87950400-87959400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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