Variant report

Variant	rs13195057
Chromosome Location	chr6:88169045-88169046
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:88168701..88170855-chr6:88181747..88183445,2	MCF-7	breast:
2	chr6:88167245..88169498-chr6:88180773..88182579,2	K562	blood:

Variant related genes	Relation type
ENSG00000164414	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12178951	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12528249	1.00[CEU][hapmap]
rs12529618	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12529631	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs12530034	0.93[EUR][1000 genomes]
rs13196020	1.00[CEU][hapmap]
rs13197065	0.82[EUR][1000 genomes]
rs13198605	0.82[EUR][1000 genomes]
rs13205397	0.83[EUR][1000 genomes]
rs13217556	0.86[EUR][1000 genomes]
rs13217637	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs13218502	1.00[CEU][hapmap]
rs13219364	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs13220737	0.82[EUR][1000 genomes]
rs16879293	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs16879295	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs34294674	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs34373986	0.86[EUR][1000 genomes]
rs34592526	0.82[EUR][1000 genomes]
rs35580717	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs35822597	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs45563737	0.86[EUR][1000 genomes]
rs58735049	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs60711734	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6454604	1.00[CEU][hapmap]
rs66632635	0.83[EUR][1000 genomes]
rs66786089	0.86[EUR][1000 genomes]
rs66805147	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs66819255	0.82[EUR][1000 genomes]
rs67569613	0.86[EUR][1000 genomes]
rs68100217	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71572757	0.82[EUR][1000 genomes]
rs71572758	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018155	chr6:88049729-88272862	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv830722	chr6:88054186-88223625	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1031961	chr6:88110401-88367006	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1031460	chr6:88153079-88410050	Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv1026482	chr6:88164934-88409728	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv1027706	chr6:88168987-88409728	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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