Variant report

Variant	rs13195486
Chromosome Location	chr6:64794915-64794916
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs34051386	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35495794	0.88[EUR][1000 genomes]
rs35979438	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4426982	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4710461	0.89[EUR][1000 genomes]
rs9294396	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9342117	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9353474	0.89[EUR][1000 genomes]
rs9353533	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9362475	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026162	chr6:64639580-65470828	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538272	chr6:64639580-65470828	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1027073	chr6:64723023-64893945	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13195486	IFI35	trans	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64793400-64795000	Enhancers	Fetal Intestine Small	intestine
2	chr6:64793400-64795000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr6:64793400-64795000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:64794000-64795400	Enhancers	HepG2	liver
5	chr6:64794600-64795000	Enhancers	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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