The 2.0 version of rSNPBase

Variant report

Variant rs13196441
Chromosome Location chr6:13218771-13218772
allele C/G/T
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:13182000-13230000 Weak transcription Brain Angular Gyrus brain
2 chr6:13184000-13220800 Weak transcription Brain Germinal Matrix brain
3 chr6:13203200-13230200 Weak transcription Fetal Stomach stomach
4 chr6:13206400-13229800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
5 chr6:13206400-13230000 Weak transcription Brain Inferior Temporal Lobe brain
6 chr6:13208200-13239800 Weak transcription Brain Substantia Nigra brain
7 chr6:13208400-13230200 Weak transcription Brain Cingulate Gyrus brain
8 chr6:13212400-13229800 Weak transcription Right Ventricle heart
9 chr6:13213200-13219600 Weak transcription Lung lung
10 chr6:13213400-13230000 Weak transcription Fetal Brain Female brain
11 chr6:13214000-13227400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
12 chr6:13215400-13219000 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
13 chr6:13216400-13219000 Enhancers Fetal Intestine Large intestine
14 chr6:13216600-13218800 Enhancers Fetal Adrenal Gland Adrenal Gland
15 chr6:13216600-13219800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
16 chr6:13216800-13218800 Enhancers Primary B cells from peripheral blood blood
17 chr6:13216800-13218800 Enhancers Primary hematopoietic stem cells short term culture blood
18 chr6:13216800-13218800 Enhancers Fetal Intestine Small intestine
19 chr6:13217000-13218800 Enhancers HUVEC blood vessel
20 chr6:13217400-13218800 Enhancers Right Atrium heart
21 chr6:13217600-13218800 Enhancers NH-A brain
22 chr6:13217800-13219000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
23 chr6:13217800-13219400 Enhancers Primary neutrophils fromperipheralblood blood
24 chr6:13217800-13222600 Weak transcription Aorta Aorta
25 chr6:13217800-13230000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
26 chr6:13217800-13230000 Weak transcription Spleen Spleen
27 chr6:13217800-13242400 Weak transcription Pancreas Pancrea
28 chr6:13218000-13219200 Enhancers Fetal Heart heart
29 chr6:13218200-13218800 Enhancers Primary B cells from cord blood blood
30 chr6:13218200-13218800 Enhancers Primary hematopoietic stem cells blood
31 chr6:13218200-13219800 Weak transcription Brain Anterior Caudate brain
32 chr6:13218200-13227800 Weak transcription Stomach Smooth Muscle stomach
33 chr6:13218200-13230200 Weak transcription Brain Hippocampus Middle brain
34 chr6:13218200-13235000 Weak transcription Adipose Nuclei Adipose
35 chr6:13218400-13219000 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
36 chr6:13218400-13241000 Weak transcription Duodenum Smooth Muscle Duodenum
37 chr6:13218600-13218800 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
38 chr6:13218600-13222400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
39 chr6:13218600-13227800 Weak transcription Left Ventricle heart
40 chr6:13218600-13230000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
41 chr6:13218600-13234400 Weak transcription HSMM muscle

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Last update: Aug 31, 2015