Variant report

Variant	rs13197086
Chromosome Location	chr6:24536706-24536707
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24534085..24537392-chr6:24543907..24547453,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12200033	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12211574	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13204739	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13208964	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34809203	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34020	chr6:24481299-24606036	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24496000-24538000	Weak transcription	Esophagus	oesophagus
2	chr6:24496200-24583000	Weak transcription	Hela-S3	cervix
3	chr6:24507800-24536800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:24507800-24539200	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:24509400-24545800	Weak transcription	Small Intestine	intestine
6	chr6:24523000-24537000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:24523600-24536800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr6:24526400-24537000	Weak transcription	Primary B cells from cord blood	blood
9	chr6:24528400-24537800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:24528400-24540800	Strong transcription	Liver	Liver
11	chr6:24530000-24540800	Strong transcription	Thymus	Thymus
12	chr6:24530200-24538200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr6:24530200-24540800	Strong transcription	Fetal Thymus	thymus
14	chr6:24530400-24538200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:24532200-24536800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:24532200-24545000	Weak transcription	K562	blood
17	chr6:24533200-24536800	Weak transcription	Fetal Heart	heart
18	chr6:24534400-24537400	Weak transcription	Right Ventricle	heart
19	chr6:24534800-24539400	Weak transcription	Fetal Brain Female	brain
20	chr6:24534800-24540000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr6:24534800-24542400	Weak transcription	Fetal Kidney	kidney
22	chr6:24535000-24537600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:24535000-24538600	Weak transcription	Spleen	Spleen
24	chr6:24535000-24542200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr6:24535000-24546200	Weak transcription	Pancreas	Pancrea
26	chr6:24535000-24547400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:24535200-24539200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr6:24535200-24566600	Weak transcription	Brain Germinal Matrix	brain
29	chr6:24535200-24591200	Weak transcription	Fetal Brain Male	brain
30	chr6:24535400-24537200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr6:24535400-24537400	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr6:24535400-24537600	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr6:24535400-24538600	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr6:24535400-24539800	Weak transcription	Primary hematopoietic stem cells	blood
35	chr6:24535400-24550000	Weak transcription	Gastric	stomach
36	chr6:24535600-24537200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr6:24535600-24537200	Weak transcription	Duodenum Mucosa	Duodenum
38	chr6:24535600-24537400	Weak transcription	HepG2	liver
39	chr6:24535600-24537600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:24535600-24537600	Weak transcription	Fetal Intestine Small	intestine
41	chr6:24535600-24537600	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr6:24535600-24537600	Weak transcription	Stomach Smooth Muscle	stomach
43	chr6:24535600-24537800	Weak transcription	Aorta	Aorta
44	chr6:24535600-24538200	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr6:24535600-24539000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr6:24535600-24539000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr6:24535600-24539400	Weak transcription	Left Ventricle	heart
48	chr6:24535600-24539400	Weak transcription	Ovary	ovary
49	chr6:24535600-24540400	Weak transcription	Fetal Intestine Large	intestine
50	chr6:24535600-24540400	Weak transcription	Lung	lung

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