Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10806074	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10943378	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10943379	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12663905	0.83[AMR][1000 genomes]
rs1381674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1457946	0.83[ASN][1000 genomes]
rs1457953	0.83[AMR][1000 genomes]
rs1457954	0.83[AMR][1000 genomes]
rs1824251	0.83[ASN][1000 genomes]
rs35039603	0.97[EUR][1000 genomes]
rs35534805	0.97[EUR][1000 genomes]
rs9343492	0.83[AFR][1000 genomes]
rs9343493	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9350674	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9352385	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9352387	0.97[EUR][1000 genomes]
rs9359221	0.83[AFR][1000 genomes]
rs9361128	0.83[AMR][1000 genomes]
rs9361131	0.97[EUR][1000 genomes]
rs9361132	0.97[EUR][1000 genomes]
rs9361133	0.97[EUR][1000 genomes]
rs9361134	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9361135	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9361137	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019520	chr6:77355212-77875164	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538321	chr6:77355212-77875164	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv886217	chr6:77415155-77490717	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv886218	chr6:77415155-77500526	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv886220	chr6:77415155-77505717	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv886219	chr6:77415155-77515516	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77481000-77486800	Weak transcription	Gastric	stomach
2	chr6:77482000-77488200	Weak transcription	Stomach Mucosa	stomach
3	chr6:77483200-77488600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:77484400-77486600	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr6:77484800-77488400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr6:77485000-77488400	Weak transcription	Fetal Intestine Small	intestine
7	chr6:77485200-77486800	Weak transcription	Pancreas	Pancrea
8	chr6:77485200-77488200	Weak transcription	Fetal Intestine Large	intestine
9	chr6:77485400-77487200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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