Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11966557	0.83[CHB][hapmap]
rs12205029	0.83[CHB][hapmap]
rs12661982	0.85[EUR][1000 genomes]
rs12662029	0.87[EUR][1000 genomes]
rs13195526	0.83[CHB][hapmap];0.80[JPT][hapmap]
rs13210690	0.89[CEU][hapmap];0.83[CHB][hapmap];0.80[JPT][hapmap];0.88[YRI][hapmap];0.87[EUR][1000 genomes]
rs1334901	0.89[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.91[YRI][hapmap];0.87[EUR][1000 genomes]
rs1334902	0.90[CEU][hapmap];0.83[CHB][hapmap];0.88[YRI][hapmap];0.87[EUR][1000 genomes]
rs17075821	0.89[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.95[YRI][hapmap];0.87[EUR][1000 genomes]
rs17075832	0.87[EUR][1000 genomes]
rs17075854	0.87[EUR][1000 genomes]
rs17189832	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs2050390	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6568828	0.87[EUR][1000 genomes]
rs6904640	0.87[EUR][1000 genomes]
rs6926298	0.90[CEU][hapmap];0.83[CHB][hapmap];0.80[JPT][hapmap];0.88[YRI][hapmap];0.87[EUR][1000 genomes]
rs7739113	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7739597	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs7740376	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744242	0.88[EUR][1000 genomes]
rs7772231	0.90[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114346400-114360800	Weak transcription	HSMM	muscle
2	chr6:114351400-114365200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:114353000-114363400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:114353400-114360200	Weak transcription	HSMMtube	muscle
5	chr6:114353400-114360800	Weak transcription	Aorta	Aorta

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