Variant report

Variant	rs13198558
Chromosome Location	chr6:37746921-37746922
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37746514..37749861-chr6:37785177..37789437,3	MCF-7	breast:
2	chr6:37744756..37747522-chr6:37749501..37752437,3	K562	blood:

Variant related genes	Relation type
ENSG00000156639	Chromatin interaction
ENSG00000225945	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12193708	0.82[ASN][1000 genomes]
rs12207050	0.82[ASN][1000 genomes]
rs34054193	0.82[ASN][1000 genomes]
rs36077256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59725004	0.96[ASN][1000 genomes]
rs6929224	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37731600-37751000	Weak transcription	Psoas Muscle	Psoas
2	chr6:37740800-37750400	Weak transcription	Fetal Brain Male	brain
3	chr6:37742400-37750800	Weak transcription	Liver	Liver
4	chr6:37744000-37748400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
5	chr6:37744000-37748600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:37744200-37748200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:37744400-37748600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:37744400-37750800	Weak transcription	Right Atrium	heart
9	chr6:37744800-37747800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:37744800-37749200	Enhancers	GM12878-XiMat	blood
11	chr6:37745000-37748200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
12	chr6:37745200-37747200	Enhancers	Fetal Brain Female	brain
13	chr6:37745600-37747000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:37745800-37747200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:37745800-37747200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
16	chr6:37745800-37747600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:37746200-37747400	Enhancers	Fetal Muscle Leg	muscle
18	chr6:37746400-37748400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
19	chr6:37746600-37747400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:37746600-37747400	Enhancers	Pancreas	Pancrea
21	chr6:37746600-37748000	Enhancers	Brain Germinal Matrix	brain
22	chr6:37746600-37748400	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr6:37746600-37748600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr6:37746800-37747000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
25	chr6:37746800-37747000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
26	chr6:37746800-37747000	Enhancers	HSMMtube	muscle
27	chr6:37746800-37747200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
28	chr6:37746800-37747200	Enhancers	Fetal Intestine Small	intestine
29	chr6:37746800-37747400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
30	chr6:37746800-37747400	Enhancers	HSMM	muscle
31	chr6:37746800-37748000	Enhancers	Duodenum Mucosa	Duodenum
32	chr6:37746800-37748200	Enhancers	NHDF-Ad	bronchial
33	chr6:37746800-37748600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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