Variant report

Variant	rs13198872
Chromosome Location	chr6:88286201-88286202
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:87866903..87868749-chr6:88285297..88287961,2	MCF-7	breast:
2	chr6:88285212..88293434-chr6:88297589..88302538,14	K562	blood:
3	chr6:88182571..88184838-chr6:88283979..88286941,2	MCF-7	breast:
4	chr6:88282649..88284478-chr6:88285308..88287961,2	MCF-7	breast:
5	chr6:88276178..88278517-chr6:88285720..88288387,2	K562	blood:
6	chr6:88285921..88288874-chr6:88289679..88293937,3	MCF-7	breast:
7	chr6:88284821..88286391-chr6:88289308..88290910,2	K562	blood:
8	chr6:88268600..88271496-chr6:88285308..88287574,2	MCF-7	breast:
9	chr6:88283650..88286214-chr6:88294247..88295894,2	K562	blood:
10	chr6:88282635..88286754-chr6:88286787..88288868,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000146282	Chromatin interaction
ENSG00000135336	Chromatin interaction
ENSG00000164414	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031961	chr6:88110401-88367006	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv1031460	chr6:88153079-88410050	Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv1026482	chr6:88164934-88409728	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1027706	chr6:88168987-88409728	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv538354	chr6:88273858-88311606	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv511905	chr6:88284245-88287678	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	esv2569279	chr6:88284922-88286659	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	esv3493601	chr6:88285055-88287244	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	esv3332457	chr6:88285577-88286376	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	esv6087	chr6:88285580-88286393	Enhancers Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	esv3474152	chr6:88285602-88286353	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	esv3493602	chr6:88285603-88286399	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	esv2283561	chr6:88285626-88286332	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	esv3411964	chr6:88285633-88286360	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	esv3493600	chr6:88285639-88286315	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
16	esv3493603	chr6:88285639-88286315	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
17	esv3378786	chr6:88285728-88286262	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
18	esv3474153	chr6:88285731-88286315	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
19	esv3474154	chr6:88285762-88286282	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13198872	SLC35A1	cis	brain	BrainEAC
rs13198872	CNR1	cis	temporal cortex	BrainEAC

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88217800-88295800	Weak transcription	Fetal Brain Male	brain
2	chr6:88227800-88298800	Weak transcription	Esophagus	oesophagus
3	chr6:88228400-88298400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:88229600-88289000	Weak transcription	Lung	lung
5	chr6:88251000-88291400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:88256200-88297600	Weak transcription	Right Ventricle	heart
7	chr6:88256400-88295800	Weak transcription	Gastric	stomach
8	chr6:88263400-88291400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:88264600-88291000	Weak transcription	Brain Angular Gyrus	brain
10	chr6:88269600-88291400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:88271400-88288200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr6:88271600-88288800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:88271600-88288800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr6:88272200-88297000	Weak transcription	Brain Germinal Matrix	brain
15	chr6:88272400-88289200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:88272400-88291000	Weak transcription	Fetal Brain Female	brain
17	chr6:88272400-88296000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr6:88272400-88297400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:88272400-88297400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:88272600-88291200	Weak transcription	HSMMtube	muscle
21	chr6:88272600-88292000	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr6:88272800-88289800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:88272800-88291000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr6:88273000-88292000	Weak transcription	Colonic Mucosa	Colon
25	chr6:88273000-88296000	Weak transcription	Brain Substantia Nigra	brain
26	chr6:88273400-88290200	Weak transcription	HMEC	breast
27	chr6:88273600-88292400	Weak transcription	Hela-S3	cervix
28	chr6:88273600-88298200	Weak transcription	Fetal Kidney	kidney
29	chr6:88274000-88288800	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr6:88274000-88288800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:88274000-88290800	Weak transcription	Stomach Smooth Muscle	stomach
32	chr6:88274200-88288800	Weak transcription	NHDF-Ad	bronchial
33	chr6:88274200-88295000	Weak transcription	NHLF	lung
34	chr6:88274400-88289000	Weak transcription	Fetal Muscle Leg	muscle
35	chr6:88274400-88292200	Weak transcription	Fetal Lung	lung
36	chr6:88274800-88298800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr6:88276400-88288800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr6:88278200-88286800	Weak transcription	Fetal Stomach	stomach
39	chr6:88278600-88289600	Weak transcription	Fetal Muscle Trunk	muscle
40	chr6:88278800-88290200	Weak transcription	Primary B cells from cord blood	blood
41	chr6:88278800-88290600	Weak transcription	HSMM	muscle
42	chr6:88278800-88297400	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr6:88279200-88288800	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr6:88279400-88288800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr6:88279400-88289800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr6:88279600-88291000	Weak transcription	Placenta	Placenta
47	chr6:88280200-88289000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr6:88281800-88286600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr6:88282000-88292200	Weak transcription	NHEK	skin
50	chr6:88282600-88289600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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