Variant report

Variant	rs13201823
Chromosome Location	chr6:36641929-36641930
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36640651..36642338-chr6:36646391..36648359,2	K562	blood:
2	chr6:36581748..36603537-chr6:36641861..36652365,77	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CPNE5-3	chr6:36641398-36642903	NR_109836

Variant related genes	Relation type
ENSG00000124762	Chromatin interaction
ENSG00000263894	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13201272	1.00[AFR][1000 genomes]
rs3176321	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35071464	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031191	chr6:36588974-36718015	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv538201	chr6:36588974-36718015	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	esv13626	chr6:36640176-36642182	Enhancers Weak transcription	CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36631000-36644000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:36635200-36643800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:36635400-36644000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:36635400-36645600	Weak transcription	Small Intestine	intestine
5	chr6:36635600-36644000	Weak transcription	Hela-S3	cervix
6	chr6:36636400-36643800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:36636400-36643800	Weak transcription	NH-A	brain
8	chr6:36637000-36643800	Weak transcription	Osteobl	bone
9	chr6:36637200-36643600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:36637200-36643800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:36637200-36643800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:36637200-36643800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:36637200-36643800	Weak transcription	HSMM	muscle
14	chr6:36637400-36642600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:36637800-36642600	Weak transcription	HSMMtube	muscle
16	chr6:36637800-36643400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:36637800-36643400	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr6:36637800-36643800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr6:36637800-36643800	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr6:36638800-36644200	Weak transcription	Ovary	ovary
21	chr6:36640000-36643800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:36640000-36643800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:36640000-36644000	Weak transcription	Duodenum Mucosa	Duodenum
24	chr6:36640200-36642000	Weak transcription	HepG2	liver
25	chr6:36640200-36642400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:36640200-36643800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:36640400-36645600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr6:36640600-36643200	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr6:36640800-36643800	Weak transcription	Fetal Intestine Small	intestine
30	chr6:36641000-36643800	Weak transcription	Fetal Intestine Large	intestine
31	chr6:36641200-36642400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr6:36641600-36643000	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr6:36641600-36643800	Enhancers	GM12878-XiMat	blood
34	chr6:36641800-36642000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr6:36641800-36644000	Enhancers	Fetal Muscle Leg	muscle

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