Variant report

Variant	rs13202365
Chromosome Location	chr6:161837789-161837790
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:161827498..161831035-chr6:161833776..161838096,4	K562	blood:
2	chr6:161836595..161839567-chr6:161842900..161844597,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10455880	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10455881	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10455882	0.82[ASN][1000 genomes]
rs10455883	0.82[ASN][1000 genomes]
rs10455884	0.82[ASN][1000 genomes]
rs10945748	1.00[JPT][hapmap]
rs12196495	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12197865	0.81[ASN][1000 genomes]
rs12199584	1.00[JPT][hapmap]
rs12210160	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs13217906	1.00[JPT][hapmap]
rs13219048	1.00[JPT][hapmap]
rs17560782	1.00[JPT][hapmap]
rs17641094	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs35757923	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4371833	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs4533970	1.00[CHB][hapmap]
rs62435931	0.82[ASN][1000 genomes]
rs62435937	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv2752091	chr6:161592100-161855785	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv481931	chr6:161647026-161961906	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1031234	chr6:161676768-162250726	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv886819	chr6:161712035-162520133	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv886820	chr6:161712880-162184932	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv830854	chr6:161739926-161927515	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv518931	chr6:161793319-162406335	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv481861	chr6:161802883-162160197	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv1033192	chr6:161812419-161860010	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv886821	chr6:161812626-161859628	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1024921	chr6:161814295-161860636	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv2761040	chr6:161814307-161860636	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv520078	chr6:161814907-161860010	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv605066	chr6:161814907-161860010	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv481930	chr6:161815297-161860058	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv605067	chr6:161816660-161860010	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv1022345	chr6:161816661-161860010	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv1018065	chr6:161816661-161860169	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	nsv1018466	chr6:161816661-161860636	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
22	nsv605068	chr6:161817168-161860010	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
23	nsv1023319	chr6:161817703-161860636	Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
24	nsv481981	chr6:161829077-162215745	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
25	nsv1015211	chr6:161836242-161860636	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161830400-161838800	Weak transcription	NHDF-Ad	bronchial
2	chr6:161833600-161840400	Enhancers	Fetal Muscle Leg	muscle
3	chr6:161834000-161840400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr6:161834200-161839000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:161834400-161839400	Enhancers	Pancreas	Pancrea
6	chr6:161835400-161838800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:161835800-161839200	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:161836000-161837800	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr6:161836000-161838400	Weak transcription	Fetal Brain Female	brain
10	chr6:161836000-161839000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:161836200-161838000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:161836200-161838600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:161836200-161838600	Weak transcription	Fetal Brain Male	brain
14	chr6:161836200-161838800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:161836200-161838800	Weak transcription	Psoas Muscle	Psoas
16	chr6:161836200-161838800	Weak transcription	HMEC	breast
17	chr6:161836200-161839200	Weak transcription	Brain Angular Gyrus	brain
18	chr6:161836200-161839200	Weak transcription	Brain Anterior Caudate	brain
19	chr6:161836200-161839200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr6:161836200-161839200	Weak transcription	Brain Substantia Nigra	brain
21	chr6:161836400-161838400	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr6:161836400-161838800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr6:161836400-161838800	Weak transcription	Brain Germinal Matrix	brain
24	chr6:161836400-161838800	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr6:161836800-161838400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:161837000-161838600	Weak transcription	HSMMtube	muscle
27	chr6:161837000-161838800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr6:161837000-161843200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr6:161837000-161843400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr6:161837200-161838400	Weak transcription	Ovary	ovary
31	chr6:161837200-161838400	Weak transcription	HSMM	muscle
32	chr6:161837200-161838600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr6:161837200-161838600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr6:161837200-161839200	Enhancers	Fetal Muscle Trunk	muscle
35	chr6:161837400-161837800	Bivalent Enhancer	K562	blood
36	chr6:161837400-161838600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr6:161837400-161839000	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr6:161837400-161839000	Weak transcription	Esophagus	oesophagus
39	chr6:161837400-161845600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr6:161837600-161838600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr6:161837600-161839200	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr6:161837600-161839400	Weak transcription	Fetal Kidney	kidney
43	chr6:161837600-161841000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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