Variant report

Variant	rs1320257
Chromosome Location	chr3:139919124-139919125
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2350507	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs4683809	1.00[CEU][hapmap]
rs6798469	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998423	chr3:139526446-139947336	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv829739	chr3:139797496-140002685	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1008578	chr3:139907172-139942453	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1003141	chr3:139907434-139942453	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139915200-139920000	Enhancers	Brain Cingulate Gyrus	brain
2	chr3:139915600-139920400	Enhancers	Brain Substantia Nigra	brain
3	chr3:139916000-139919600	Weak transcription	Psoas Muscle	Psoas
4	chr3:139916400-139920200	Enhancers	Brain Angular Gyrus	brain
5	chr3:139916400-139920200	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr3:139916400-139921000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:139918000-139921800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr3:139918400-139920400	Enhancers	Brain Germinal Matrix	brain
9	chr3:139918600-139919400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr3:139918600-139919800	Weak transcription	Brain Hippocampus Middle	brain
11	chr3:139919000-139919400	Weak transcription	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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