Variant report

Variant	rs13203202
Chromosome Location	chr6:25582771-25582772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:25577394..25580689-chr6:25580776..25585685,6	MCF-7	breast:
2	chr6:25566255..25568302-chr6:25580219..25582911,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10434845	0.90[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2328879	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3804120	0.82[JPT][hapmap]
rs9295665	0.82[JPT][hapmap]
rs9348687	0.82[CEU][hapmap];0.87[TSI][hapmap]

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25471600-25597200	Weak transcription	Gastric	stomach
2	chr6:25516800-25606400	Weak transcription	Lung	lung
3	chr6:25522400-25588600	Weak transcription	HMEC	breast
4	chr6:25530800-25584200	Weak transcription	Fetal Intestine Small	intestine
5	chr6:25538600-25592800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:25541600-25584400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:25541600-25612000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:25544000-25593600	Weak transcription	Fetal Lung	lung
9	chr6:25547200-25600600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:25556200-25618000	Weak transcription	Primary B cells from cord blood	blood
11	chr6:25557200-25591400	Weak transcription	Ovary	ovary
12	chr6:25565400-25583400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr6:25572000-25622200	Weak transcription	HSMMtube	muscle
14	chr6:25574200-25594200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr6:25577000-25590600	Weak transcription	Brain Angular Gyrus	brain
16	chr6:25577200-25592000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr6:25577200-25594200	Weak transcription	Brain Substantia Nigra	brain
18	chr6:25577200-25603400	Weak transcription	Fetal Brain Female	brain
19	chr6:25577200-25624800	Weak transcription	Adipose Nuclei	Adipose
20	chr6:25577600-25597200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:25578600-25583200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:25579200-25604600	Weak transcription	Fetal Brain Male	brain
23	chr6:25579600-25588600	Weak transcription	Primary hematopoietic stem cells	blood
24	chr6:25579600-25593200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:25580000-25583000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:25580000-25588400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr6:25580000-25590000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr6:25580200-25584200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:25580200-25585000	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr6:25580200-25597800	Weak transcription	Hela-S3	cervix
31	chr6:25580200-25599000	Weak transcription	NHEK	skin
32	chr6:25580400-25584600	Weak transcription	Fetal Kidney	kidney
33	chr6:25580400-25592600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr6:25580600-25583400	Weak transcription	Spleen	Spleen
35	chr6:25580600-25584200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr6:25580600-25584400	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr6:25580600-25608600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr6:25580600-25610200	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr6:25580800-25582800	Weak transcription	Thymus	Thymus
40	chr6:25580800-25583600	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr6:25580800-25599600	Weak transcription	Small Intestine	intestine
42	chr6:25581000-25584000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr6:25581000-25584800	Strong transcription	Aorta	Aorta
44	chr6:25581000-25587800	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr6:25581200-25583600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr6:25581200-25585200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr6:25581200-25585600	Strong transcription	Cortex derived primary cultured neurospheres	brain
48	chr6:25581200-25622800	Weak transcription	Colonic Mucosa	Colon
49	chr6:25581400-25583200	Strong transcription	Fetal Intestine Large	intestine
50	chr6:25581400-25583400	Weak transcription	Dnd41	blood

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