Variant report

Variant	rs13203445
Chromosome Location	chr6:114256944-114256945
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:114245318..114247054-chr6:114255867..114258727,3	K562	blood:
2	chr12:65149603..65150197-chr6:114256447..114256980,2	MCF-7	breast:
3	chr6:113101425..113102335-chr6:114256568..114257961,4	MCF-7	breast:
4	chr6:113101607..113102298-chr6:114256929..114257559,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13212283	0.87[ASN][1000 genomes]
rs1407459	0.84[ASN][1000 genomes]
rs2243356	0.96[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2475631	0.85[ASN][1000 genomes]
rs2499618	0.84[ASN][1000 genomes]
rs352062	0.87[ASN][1000 genomes]
rs352063	0.85[ASN][1000 genomes]
rs352066	0.85[ASN][1000 genomes]
rs352067	0.85[ASN][1000 genomes]
rs352093	0.82[ASN][1000 genomes]
rs3757016	0.91[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs498519	0.83[ASN][1000 genomes]
rs543139	0.82[ASN][1000 genomes]
rs6568820	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6917804	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7754939	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9398369	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv3363275	chr6:114101331-114302866	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114242400-114265400	Weak transcription	Thymus	Thymus
2	chr6:114242600-114261000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:114242800-114260200	Weak transcription	HepG2	liver
4	chr6:114246000-114260200	Weak transcription	HUVEC	blood vessel
5	chr6:114248600-114265400	Weak transcription	Fetal Heart	heart
6	chr6:114248800-114258800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:114251000-114260000	Weak transcription	NHDF-Ad	bronchial
8	chr6:114251800-114261200	Weak transcription	K562	blood
9	chr6:114252200-114260400	Weak transcription	Esophagus	oesophagus
10	chr6:114252400-114258400	Weak transcription	Primary T cells from cord blood	blood
11	chr6:114252400-114260000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr6:114252400-114261200	Weak transcription	Fetal Lung	lung
13	chr6:114252400-114265200	Weak transcription	Fetal Brain Male	brain
14	chr6:114252400-114266800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr6:114252600-114260000	Weak transcription	GM12878-XiMat	blood
16	chr6:114252600-114260200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:114252600-114260200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:114252600-114261200	Weak transcription	Primary hematopoietic stem cells	blood
19	chr6:114252600-114262600	Weak transcription	Fetal Kidney	kidney
20	chr6:114252600-114263800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr6:114252600-114264600	Weak transcription	Left Ventricle	heart
22	chr6:114252800-114258400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:114252800-114258600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:114252800-114259400	Weak transcription	Osteobl	bone
25	chr6:114252800-114260000	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr6:114252800-114260000	Weak transcription	HMEC	breast
27	chr6:114252800-114260000	Weak transcription	NHEK	skin
28	chr6:114252800-114260200	Weak transcription	Brain Germinal Matrix	brain
29	chr6:114252800-114260200	Weak transcription	HSMMtube	muscle
30	chr6:114252800-114260600	Weak transcription	Primary B cells from cord blood	blood
31	chr6:114252800-114262200	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr6:114253000-114258400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr6:114253000-114259200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr6:114253000-114259400	Weak transcription	Placenta	Placenta
35	chr6:114253000-114289800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:114253200-114258200	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr6:114253200-114259800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr6:114253400-114258600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr6:114253400-114258600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr6:114253400-114258800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:114253400-114259400	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr6:114253400-114260200	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr6:114253400-114260200	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr6:114253400-114260200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr6:114253400-114260200	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr6:114253400-114290600	Weak transcription	Aorta	Aorta
47	chr6:114253600-114259600	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr6:114253600-114260200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr6:114253600-114260200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr6:114253800-114258400	Weak transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links