Variant report

Variant	rs13203475
Chromosome Location	chr6:149568231-149568232
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr6:149567902-149568338	GM12878	blood:	n/a	chr6:149568125-149568134
2	RUNX3	chr6:149567764-149568367	GM12878	blood:	n/a	n/a
3	EP300	chr6:149568001-149568270	GM12878	blood:	n/a	chr6:149568125-149568139
4	CHD2	chr6:149567962-149568369	GM12878	blood:	n/a	n/a
5	IRF4	chr6:149567864-149568417	GM12878	blood:	n/a	n/a
6	RUNX3	chr6:149567813-149568319	GM12878	blood:	n/a	n/a
7	MAZ	chr6:149568011-149568389	GM12878	blood:	n/a	n/a
8	ELF1	chr6:149567651-149568485	GM12878	blood:	n/a	n/a
9	SPI1	chr6:149567903-149568364	HL-60	blood:	n/a	chr6:149568125-149568134
10	MTA3	chr6:149567759-149568447	GM12878	blood:	n/a	n/a
11	SP1	chr6:149567847-149568300	GM12878	blood:	n/a	chr6:149568236-149568250
12	ZEB1	chr6:149567987-149568380	GM12878	blood:	n/a	chr6:149568208-149568217
13	NFATC1	chr6:149567860-149568263	GM12878	blood:	n/a	n/a
14	PAX5	chr6:149567698-149568347	GM12878	blood:	n/a	chr6:149568125-149568134
15	SPI1	chr6:149567849-149568336	GM12891	blood:	n/a	chr6:149568125-149568134
16	BCLAF1	chr6:149567827-149568319	GM12878	blood:	n/a	chr6:149568125-149568134 chr6:149568197-149568205
17	BHLHE40	chr6:149568011-149568428	GM12878	blood:	n/a	n/a
18	WRNIP1	chr6:149567942-149568440	GM12878	blood:	n/a	n/a
19	ATF2	chr6:149567781-149568290	GM12878	blood:	n/a	n/a
20	BCLAF1	chr6:149567702-149568363	GM12878	blood:	n/a	chr6:149568125-149568134 chr6:149568197-149568205
21	BCL11A	chr6:149567931-149568266	GM12878	blood:	n/a	chr6:149568125-149568134 chr6:149568197-149568205
22	EBF1	chr6:149567887-149568304	GM12878	blood:	n/a	n/a
23	EBF1	chr6:149568011-149568240	GM12878	blood:	n/a	n/a
24	SPI1	chr6:149567587-149568587	GM12878	blood:	n/a	chr6:149568125-149568134
25	MAX	chr6:149567991-149568428	GM12878	blood:	n/a	n/a
26	POLR2A	chr6:149567606-149568398	GM12892	blood:	n/a	n/a
27	SPI1	chr6:149567814-149568340	GM12891	blood:	n/a	chr6:149568125-149568134
28	POLR2A	chr6:149567689-149568240	GM12892	blood:	n/a	n/a
29	EP300	chr6:149567925-149568448	GM12878	blood:	n/a	chr6:149568125-149568139
30	RFX5	chr6:149567975-149568237	GM12878	blood:	n/a	n/a
31	IRF4	chr6:149567845-149568351	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000225924	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs926408	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13203475	LRP11	cis	cerebellum	SCAN

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149563200-149569800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:149563600-149569800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:149567000-149570200	Enhancers	Primary B cells from cord blood	blood
4	chr6:149567200-149571000	Enhancers	Primary B cells from peripheral blood	blood
5	chr6:149567400-149569000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr6:149567600-149568400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr6:149567600-149568400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:149567600-149568400	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr6:149567600-149568400	Flanking Active TSS	GM12878-XiMat	blood
10	chr6:149567600-149568600	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr6:149567600-149568600	Enhancers	Fetal Thymus	thymus
12	chr6:149567600-149568800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:149567600-149569800	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr6:149567600-149570200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:149567800-149568600	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr6:149567800-149568600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr6:149567800-149568600	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr6:149567800-149568600	Bivalent Enhancer	HepG2	liver
19	chr6:149567800-149568800	Enhancers	Primary T cells fromperipheralblood	blood
20	chr6:149568000-149568400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr6:149568000-149568400	Enhancers	Spleen	Spleen
22	chr6:149568000-149570800	Enhancers	Primary T cells from cord blood	blood
23	chr6:149568200-149568400	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr6:149568200-149568400	Flanking Active TSS	Adipose Nuclei	Adipose
25	chr6:149568200-149568400	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr6:149568200-149568600	Weak transcription	Primary hematopoietic stem cells	blood
27	chr6:149568200-149568600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:149568200-149568600	Active TSS	Brain Cingulate Gyrus	brain
29	chr6:149568200-149568600	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr6:149568200-149570400	Enhancers	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links