Variant report

Variant	rs13203786
Chromosome Location	chr6:81225549-81225550
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10447324	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10943711	0.86[EUR][1000 genomes]
rs10943720	0.91[CHB][hapmap];0.93[CHD][hapmap];0.82[MEX][hapmap]
rs10943724	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10943725	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10943726	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11751803	0.89[EUR][1000 genomes]
rs11964999	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12195284	0.90[ASN][1000 genomes]
rs12195347	0.88[ASN][1000 genomes]
rs12207977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1454446	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2917600	0.83[ASN][1000 genomes]
rs4706121	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs471335	0.92[ASN][1000 genomes]
rs480295	0.89[ASN][1000 genomes]
rs541037	0.92[ASN][1000 genomes]
rs541841	0.89[ASN][1000 genomes]
rs546848	0.92[ASN][1000 genomes]
rs549621	0.92[ASN][1000 genomes]
rs667882	0.86[ASN][1000 genomes]
rs683706	0.83[ASN][1000 genomes]
rs6915595	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9449074	0.83[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv886311	chr6:81166178-81239971	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv886312	chr6:81166178-81309481	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv886313	chr6:81177227-81239971	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81224200-81226000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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