Variant report

Variant	rs13204569
Chromosome Location	chr6:38338341-38338342
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:38331466..38333849-chr6:38336683..38339653,2	K562	blood:
2	chr6:38331466..38333553-chr6:38337264..38339653,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10484928	0.83[ASN][1000 genomes]
rs12529551	0.83[ASN][1000 genomes]
rs13200315	0.84[EUR][1000 genomes]
rs13205736	0.84[EUR][1000 genomes]
rs13214173	0.86[EUR][1000 genomes]
rs16890615	0.83[ASN][1000 genomes]
rs16890616	0.83[ASN][1000 genomes]
rs2294738	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4573069	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62397031	0.95[ASN][1000 genomes]
rs72851451	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv885818	chr6:38147745-38436317	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv885820	chr6:38166511-38468887	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv602957	chr6:38305770-38395874	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1032358	chr6:38323745-38415855	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1022724	chr6:38332368-38454527	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38315800-38339000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:38326200-38338600	Weak transcription	Ovary	ovary
3	chr6:38327400-38338600	Weak transcription	Left Ventricle	heart
4	chr6:38331200-38339000	Weak transcription	Right Atrium	heart
5	chr6:38332800-38338800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:38333200-38338800	Weak transcription	NHDF-Ad	bronchial
7	chr6:38333600-38342400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:38335400-38338600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:38335400-38338800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:38335400-38339200	Weak transcription	HSMMtube	muscle
11	chr6:38337400-38338800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:38337400-38339400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:38337600-38338600	Weak transcription	Psoas Muscle	Psoas
14	chr6:38337800-38338600	Enhancers	Colon Smooth Muscle	Colon
15	chr6:38337800-38338800	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr6:38337800-38339000	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr6:38337800-38339600	Enhancers	Adipose Nuclei	Adipose
18	chr6:38337800-38339600	Enhancers	Rectal Smooth Muscle	rectum
19	chr6:38337800-38340000	Enhancers	Pancreatic Islets	Pancreatic Islet
20	chr6:38338000-38339400	Enhancers	Fetal Kidney	kidney
21	chr6:38338200-38339200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr6:38338200-38339400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:38338200-38339400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:38338200-38339400	Enhancers	Brain Substantia Nigra	brain
25	chr6:38338200-38341400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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