Variant report

Variant	rs13204987
Chromosome Location	chr6:119934148-119934149
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:119932862..119934948-chr6:119935688..119940006,3	K562	blood:
2	chr6:119926625..119928908-chr6:119933015..119935117,2	K562	blood:
3	chr6:119930273..119931958-chr6:119933352..119935627,2	MCF-7	breast:
4	chr6:119932562..119937060-chr6:119938471..119941600,5	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12204573	0.94[CEU][hapmap]
rs12211120	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13194523	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1417843	0.82[EUR][1000 genomes]
rs17174818	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17254459	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs731487	0.94[CEU][hapmap]
rs9285434	0.84[CEU][hapmap]
rs9320701	0.84[CEU][hapmap]
rs991356	0.94[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1027904	chr6:119709488-120001986	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv533518	chr6:119712186-119998618	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1027370	chr6:119869409-120056608	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv538431	chr6:119869409-120056608	Weak transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119930600-119935200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr6:119930600-119935200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:119930600-119948000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:119930800-119935400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:119930800-119935600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:119932200-119934400	Weak transcription	GM12878-XiMat	blood
7	chr6:119932200-119934600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:119932200-119934600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr6:119932200-119935600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:119932400-119934200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:119932800-119934200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:119932800-119934600	Enhancers	Ovary	ovary
13	chr6:119932800-119935600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:119933000-119934200	Weak transcription	HMEC	breast
15	chr6:119933200-119935400	Enhancers	NHDF-Ad	bronchial
16	chr6:119933200-119936000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr6:119933200-119936000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:119933200-119942000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:119933400-119934800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:119933400-119934800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:119933400-119935800	Enhancers	HSMM	muscle
22	chr6:119933600-119934600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:119933600-119934600	Enhancers	Adipose Nuclei	Adipose
24	chr6:119933600-119934800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:119933600-119934800	Enhancers	Osteobl	bone
26	chr6:119933800-119934200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:119933800-119934400	Enhancers	HSMMtube	muscle
28	chr6:119933800-119934600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:119933800-119934600	Enhancers	NHLF	lung
30	chr6:119933800-119935800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:119934000-119934600	Enhancers	NH-A	brain
32	chr6:119934000-119934600	Enhancers	NHEK	skin

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