Variant report

Variant	rs13204994
Chromosome Location	chr6:69621567-69621568
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13191240	0.83[AMR][1000 genomes]
rs13201645	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs13208283	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs34617600	0.83[AMR][1000 genomes]
rs35756901	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs3798978	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470831	chr6:69581991-69654650	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv886136	chr6:69598297-69654650	Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv525968	chr6:69618480-69638504	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv519494	chr6:69619007-69638504	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3339572	chr6:69620331-69624529	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69621200-69622000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:69621400-69621800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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