Variant report

Variant	rs1320569
Chromosome Location	chr1:159912329-159912330
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:159912050..159914185-chr1:159918859..159921422,2	MCF-7	breast:
2	chr1:159903338..159907350-chr1:159911938..159914320,4	K562	blood:
3	chr1:159767985..159771040-chr1:159911946..159915260,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000085552	Chromatin interaction
ENSG00000181036	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1320570	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872489	chr1:159844819-159940000	Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv524006	chr1:159886422-159923111	Flanking Active TSS Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159905800-159913600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:159907000-159915200	Weak transcription	Gastric	stomach
3	chr1:159908400-159913200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:159908400-159913800	Weak transcription	Fetal Heart	heart
5	chr1:159908400-159914600	Enhancers	Stomach Mucosa	stomach
6	chr1:159908400-159915200	Weak transcription	Spleen	Spleen
7	chr1:159908600-159913400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:159908600-159914000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr1:159908600-159914200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr1:159909000-159912800	Weak transcription	HMEC	breast
11	chr1:159909400-159914000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr1:159909600-159913600	Enhancers	NHEK	skin
13	chr1:159909800-159912600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr1:159909800-159914400	Weak transcription	Small Intestine	intestine
15	chr1:159910000-159913400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:159910000-159913400	Enhancers	Esophagus	oesophagus
17	chr1:159910200-159912600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr1:159910200-159914200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr1:159910200-159914200	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
20	chr1:159910400-159912800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr1:159910600-159913600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr1:159910600-159914400	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr1:159910600-159914400	Enhancers	Fetal Brain Male	brain
24	chr1:159910800-159913800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr1:159911000-159913000	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr1:159911000-159914400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr1:159911200-159913400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr1:159911200-159914400	Enhancers	H1 Cell Line	embryonic stem cell
29	chr1:159911400-159914000	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr1:159911400-159914800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr1:159911600-159912400	Weak transcription	Liver	Liver
32	chr1:159911600-159913200	Strong transcription	Fetal Stomach	stomach
33	chr1:159911600-159913400	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr1:159911600-159914200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr1:159911600-159914400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr1:159911800-159914000	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr1:159911800-159914400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr1:159911800-159915200	Flanking Active TSS	Fetal Brain Female	brain
39	chr1:159912000-159912800	Weak transcription	Fetal Thymus	thymus
40	chr1:159912000-159914000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr1:159912200-159912400	Flanking Active TSS	Brain Germinal Matrix	brain
42	chr1:159912200-159913000	Enhancers	Colonic Mucosa	Colon
43	chr1:159912200-159913200	Transcr. at gene 5' and 3'	Fetal Intestine Large	intestine
44	chr1:159912200-159913400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr1:159912200-159913600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr1:159912200-159913800	Enhancers	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links