Variant report

Variant	rs1320613
Chromosome Location	chr6:69735256-69735257
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10945151	0.85[YRI][hapmap]
rs11752858	0.86[YRI][hapmap]
rs1297485	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1298521	0.94[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1384248	0.84[YRI][hapmap]
rs1482324	0.86[YRI][hapmap]
rs17402611	0.85[YRI][hapmap]
rs3799003	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3799024	0.81[EUR][1000 genomes]
rs4706854	0.84[YRI][hapmap]
rs493317	0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs559851	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs654801	0.83[EUR][1000 genomes]
rs676505	0.93[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs680726	0.88[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.81[EUR][1000 genomes]
rs6913677	0.84[YRI][hapmap]
rs9354814	0.85[YRI][hapmap]
rs9446089	0.84[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69685800-69758800	Weak transcription	Fetal Brain Male	brain
2	chr6:69701000-69737600	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:69702400-69737600	Weak transcription	Brain Angular Gyrus	brain
4	chr6:69720400-69758600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr6:69721600-69752200	Weak transcription	Fetal Lung	lung
6	chr6:69723400-69742600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:69729400-69759400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:69732800-69735800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:69733400-69736000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:69733600-69735600	Weak transcription	HUVEC	blood vessel
11	chr6:69733600-69736000	Weak transcription	NHDF-Ad	bronchial
12	chr6:69733600-69736000	Weak transcription	Osteobl	bone
13	chr6:69733800-69736000	Weak transcription	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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