Variant report

Variant	rs13206772
Chromosome Location	chr6:143018973-143018974
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143016859..143019440-chr6:143145754..143147934,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12200460	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12200517	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13212224	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13212849	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830828	chr6:142970134-143116517	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13206772	UTRN	cis	parietal	SCAN

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143014200-143019800	Enhancers	Fetal Stomach	stomach
2	chr6:143014400-143023800	Weak transcription	Right Atrium	heart
3	chr6:143014400-143028200	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr6:143014600-143019000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:143014600-143023800	Weak transcription	Left Ventricle	heart
6	chr6:143014800-143019000	Weak transcription	Placenta	Placenta
7	chr6:143015000-143019600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:143015000-143023600	Weak transcription	NHEK	skin
9	chr6:143015200-143026600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr6:143015400-143019800	Enhancers	Fetal Muscle Leg	muscle
11	chr6:143015600-143019400	Enhancers	Fetal Brain Female	brain
12	chr6:143015800-143019000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:143015800-143019800	Enhancers	Fetal Lung	lung
14	chr6:143016000-143020600	Weak transcription	GM12878-XiMat	blood
15	chr6:143016400-143019000	Enhancers	Gastric	stomach
16	chr6:143016400-143019200	Enhancers	Brain Germinal Matrix	brain
17	chr6:143016400-143023800	Weak transcription	Spleen	Spleen
18	chr6:143016600-143019800	Enhancers	Fetal Kidney	kidney
19	chr6:143016800-143019200	Weak transcription	Brain Hippocampus Middle	brain
20	chr6:143017400-143019000	Enhancers	Pancreas	Pancrea
21	chr6:143017400-143019200	Enhancers	Psoas Muscle	Psoas
22	chr6:143017800-143019600	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr6:143017800-143023600	Weak transcription	Brain Anterior Caudate	brain
24	chr6:143018000-143023400	Weak transcription	HUVEC	blood vessel
25	chr6:143018000-143023600	Weak transcription	Brain Substantia Nigra	brain
26	chr6:143018200-143021800	Weak transcription	HSMMtube	muscle
27	chr6:143018200-143023600	Weak transcription	Lung	lung
28	chr6:143018400-143019800	Enhancers	Ovary	ovary
29	chr6:143018400-143020000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr6:143018400-143023800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr6:143018600-143019000	Enhancers	Fetal Thymus	thymus
32	chr6:143018600-143019200	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr6:143018600-143019200	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr6:143018600-143019200	Enhancers	Primary T cells from cord blood	blood
35	chr6:143018600-143019400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr6:143018600-143019400	Enhancers	Primary hematopoietic stem cells	blood
37	chr6:143018600-143019600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr6:143018600-143019600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr6:143018600-143019600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr6:143018600-143019600	Enhancers	Monocytes-CD14+_RO01746	blood
41	chr6:143018600-143019800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:143018600-143019800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr6:143018600-143019800	Enhancers	Brain Angular Gyrus	brain
44	chr6:143018600-143020000	Enhancers	H9 Cell Line	embryonic stem cell
45	chr6:143018800-143019000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
46	chr6:143018800-143019400	Enhancers	Primary hematopoietic stem cells short term culture	blood
47	chr6:143018800-143019600	Flanking Active TSS	Fetal Brain Male	brain
48	chr6:143018800-143020000	Enhancers	Brain Cingulate Gyrus	brain
49	chr6:143018800-143020400	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr6:143018800-143023800	Weak transcription	Esophagus	oesophagus

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