Variant report

Variant	rs13207265
Chromosome Location	chr6:163787058-163787059
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11757762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13215454	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13218651	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1889883	0.89[ASN][1000 genomes]
rs2744417	0.85[ASN][1000 genomes]
rs2784869	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163777400-163787400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:163777400-163790000	Weak transcription	Spleen	Spleen
3	chr6:163777400-163791400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:163778000-163788600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:163778400-163790800	Weak transcription	Right Atrium	heart
6	chr6:163782200-163788000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr6:163783800-163791800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:163784000-163789600	Weak transcription	Brain Anterior Caudate	brain
9	chr6:163784000-163791000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr6:163784200-163790000	Weak transcription	Brain Angular Gyrus	brain
11	chr6:163784400-163787400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr6:163784400-163788600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:163786800-163788200	Enhancers	Brain Substantia Nigra	brain
14	chr6:163787000-163787400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:163787000-163787400	Weak transcription	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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