Variant report

Variant	rs13208297
Chromosome Location	chr6:150740285-150740286
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:150738919..150740367-chr6:151006693..151007780,5	MCF-7	breast:
2	chr6:150739101..150740605-chr6:151135391..151136891,7	MCF-7	breast:
3	chr6:150739007..150740606-chr6:151135993..151137184,5	MCF-7	breast:
4	chr6:150739151..150742146-chr6:150742181..150746418,5	K562	blood:
5	chr6:150739171..150740801-chr6:150920989..150922541,9	MCF-7	breast:
6	chr6:150722584..150723485-chr6:150739885..150740902,3	K562	blood:
7	chr6:150739275..150740853-chr6:151135613..151137022,11	K562	blood:
8	chr6:150739022..150740801-chr6:151062707..151063998,9	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000232891	Chromatin interaction
ENSG00000120278	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6905592	0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022455	chr6:150727247-150755933	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150739000-150740800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:150739000-150740800	Enhancers	Hela-S3	cervix
3	chr6:150739200-150740400	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr6:150739200-150740800	Enhancers	Fetal Brain Male	brain
5	chr6:150739400-150740400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:150739400-150740400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
7	chr6:150739400-150740400	Active TSS	Skeletal Muscle Female	skeletal muscle
8	chr6:150739400-150740400	Active TSS	HUVEC	blood vessel
9	chr6:150739400-150740600	Active TSS	Primary T helper cells PMA-I stimulated	--
10	chr6:150739400-150740600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr6:150739400-150740600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:150739400-150740600	Flanking Active TSS	HMEC	breast
13	chr6:150739400-150740800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:150739400-150740800	Active TSS	Primary T cells from cord blood	blood
15	chr6:150739600-150740400	Active TSS	Breast Myoepithelial Primary Cells	Breast
16	chr6:150739600-150740400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
17	chr6:150739600-150740400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:150739600-150740400	Active TSS	Colonic Mucosa	Colon
19	chr6:150739600-150740400	Active TSS	Duodenum Mucosa	Duodenum
20	chr6:150739600-150740400	Active TSS	Ovary	ovary
21	chr6:150739600-150740400	Active TSS	Rectal Mucosa Donor 31	rectum
22	chr6:150739600-150740400	Active TSS	Right Atrium	heart
23	chr6:150739600-150740400	Active TSS	Skeletal Muscle Male	skeletal muscle
24	chr6:150739600-150740600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr6:150739600-150740600	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr6:150739600-150740600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
27	chr6:150739600-150740600	Active TSS	Primary T killer memory cells from peripheral blood	blood
28	chr6:150739600-150740600	Active TSS	Thymus	Thymus
29	chr6:150739600-150740600	Active TSS	NHDF-Ad	bronchial
30	chr6:150739600-150740600	Active TSS	NHLF	lung
31	chr6:150739600-150740800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr6:150739600-150740800	Active TSS	Brain Hippocampus Middle	brain
33	chr6:150739600-150740800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
34	chr6:150739600-150740800	Active TSS	Duodenum Smooth Muscle	Duodenum
35	chr6:150739600-150740800	Active TSS	Rectal Mucosa Donor 29	rectum
36	chr6:150739600-150740800	Active TSS	A549	lung
37	chr6:150739800-150740400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:150739800-150740400	Active TSS	Muscle Satellite Cultured Cells	--
39	chr6:150739800-150740400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr6:150739800-150740400	Active TSS	Aorta	Aorta
41	chr6:150739800-150740400	Active TSS	Brain Cingulate Gyrus	brain
42	chr6:150739800-150740400	Active TSS	Right Ventricle	heart
43	chr6:150739800-150740400	Active TSS	Stomach Mucosa	stomach
44	chr6:150739800-150740400	Active TSS	NH-A	brain
45	chr6:150739800-150740600	Active TSS	iPS-15b Cell Line	embryonic stem cell
46	chr6:150739800-150740600	Active TSS	Brain Substantia Nigra	brain
47	chr6:150739800-150740600	Active TSS	Fetal Brain Female	brain
48	chr6:150739800-150740600	Active TSS	Psoas Muscle	Psoas
49	chr6:150739800-150740600	Active TSS	Rectal Smooth Muscle	rectum
50	chr6:150739800-150740800	Active TSS	Brain Anterior Caudate	brain

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