Variant report

Variant	rs13209070
Chromosome Location	chr6:118398318-118398319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10440853	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12524008	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13199867	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28585368	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34378000	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34442334	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4270812	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4946319	0.94[EUR][1000 genomes]
rs6927289	0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72959847	0.95[EUR][1000 genomes]
rs7738960	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7741406	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.94[EUR][1000 genomes]
rs7757090	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9481761	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.95[EUR][1000 genomes]
rs9481762	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.94[EUR][1000 genomes]
rs9489302	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9489303	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9489304	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9489305	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118377200-118408600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:118386600-118409600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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