Variant report

Variant	rs13209308
Chromosome Location	chr6:161867457-161867458
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:161859122..161861758-chr6:161866811..161869668,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11752647	1.00[CHB][hapmap]
rs11755661	1.00[ASW][hapmap]
rs11962547	1.00[CHB][hapmap]
rs12526387	1.00[CHB][hapmap];0.84[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv481931	chr6:161647026-161961906	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1031234	chr6:161676768-162250726	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv886819	chr6:161712035-162520133	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv886820	chr6:161712880-162184932	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv830854	chr6:161739926-161927515	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv518931	chr6:161793319-162406335	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv481861	chr6:161802883-162160197	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv481981	chr6:161829077-162215745	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1033603	chr6:161844266-162001436	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv481750	chr6:161850976-161996586	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv481932	chr6:161862158-162097499	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161860600-161871000	Weak transcription	Right Atrium	heart
2	chr6:161862600-161868600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr6:161862800-161867600	Enhancers	Fetal Brain Male	brain
4	chr6:161863400-161867600	Enhancers	HSMM	muscle
5	chr6:161864400-161867600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:161864400-161867600	Enhancers	Fetal Muscle Leg	muscle
7	chr6:161865000-161867600	Enhancers	Adipose Nuclei	Adipose
8	chr6:161865000-161867600	Enhancers	Fetal Muscle Trunk	muscle
9	chr6:161865400-161867800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr6:161865800-161868200	Enhancers	Brain Germinal Matrix	brain
11	chr6:161866200-161867600	Enhancers	Psoas Muscle	Psoas
12	chr6:161866400-161868800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:161866600-161868000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:161866600-161868000	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr6:161866800-161867600	Weak transcription	HSMMtube	muscle
16	chr6:161866800-161868000	Weak transcription	Fetal Brain Female	brain
17	chr6:161867000-161867600	Weak transcription	NH-A	brain
18	chr6:161867200-161867600	Enhancers	Colon Smooth Muscle	Colon
19	chr6:161867200-161867600	Enhancers	Lung	lung
20	chr6:161867200-161867600	Enhancers	Stomach Smooth Muscle	stomach
21	chr6:161867400-161867600	Enhancers	Pancreas	Pancrea
22	chr6:161867400-161868000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:161867400-161868000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:161867400-161868200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:161867400-161868200	Enhancers	Brain Cingulate Gyrus	brain
26	chr6:161867400-161868800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr6:161867400-161869200	Enhancers	Fetal Kidney	kidney
28	chr6:161867400-161870400	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr6:161867400-161874400	Weak transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links