Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs13201289	0.84[EUR][1000 genomes]
rs16878497	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1925686	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2025490	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3999791	0.84[EUR][1000 genomes]
rs4235830	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4707344	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4707345	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4707355	0.80[EUR][1000 genomes]
rs6913159	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6932641	0.83[EUR][1000 genomes]
rs6940325	0.84[EUR][1000 genomes]
rs7752414	0.84[EUR][1000 genomes]
rs7757330	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7767245	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs912815	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9294375	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9444476	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9444481	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9444488	0.80[EUR][1000 genomes]
rs9450619	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9450623	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9450630	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9450636	0.84[EUR][1000 genomes]
rs9450637	0.81[EUR][1000 genomes]
rs9450638	0.83[EUR][1000 genomes]
rs9450639	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024751	chr6:87433199-87908721	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv604114	chr6:87816905-87906053	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv2758067	chr6:87817883-87992957	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv2759453	chr6:87817883-87992957	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs13210074	SLC35A1	Cis_1M	lymphoblastoid	RTeQTL
rs13210074	C6orf163	Cis_1M	lymphoblastoid	RTeQTL
rs13210074	C6orf162	Cis_1M	lymphoblastoid	RTeQTL
rs13210074	C6orf162	cis	multi-tissue	Pritchard

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:87815400-87824800	Weak transcription	Primary monocytes fromperipheralblood	blood

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