Variant report

Variant	rs13210323
Chromosome Location	chr6:35005084-35005085
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35002561..35006786-chr6:35010332..35014287,4	K562	blood:
2	chr6:34982152..34983781-chr6:35004526..35006125,2	K562	blood:
3	chr6:35002495..35005140-chr6:35015377..35017563,2	K562	blood:
4	chr6:34980740..34983781-chr6:35003942..35006125,3	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10947537	0.82[CHD][hapmap]
rs12525532	0.82[CHD][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs1535815	0.82[CHD][hapmap]
rs2049316	0.83[GIH][hapmap]
rs2689091	0.84[CHD][hapmap]
rs2762343	0.82[CHD][hapmap]
rs2820223	0.84[CHD][hapmap]
rs2820232	0.84[CHD][hapmap]
rs9469933	0.81[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Height	23563607	GWAS catalog

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13210323	TAF11	cis	cerebellum	SCAN

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34939400-35016000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:34963600-35006600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr6:34986200-35015000	Weak transcription	Primary B cells from peripheral blood	blood
4	chr6:34986400-35011800	Weak transcription	Dnd41	blood
5	chr6:34986800-35014800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:34987000-35009000	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr6:34987000-35015800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:34987400-35015800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr6:34992800-35011800	Weak transcription	Brain Germinal Matrix	brain
10	chr6:34993800-35006000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:34993800-35014600	Weak transcription	Fetal Brain Male	brain
12	chr6:34994200-35014400	Weak transcription	NHLF	lung
13	chr6:34994400-35005400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:34994600-35036000	Weak transcription	K562	blood
15	chr6:34995000-35005600	Weak transcription	Osteobl	bone
16	chr6:34995000-35005800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:34995000-35013800	Weak transcription	Hela-S3	cervix
18	chr6:34996000-35015200	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr6:34996200-35005400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:34996200-35010000	Weak transcription	Ovary	ovary
21	chr6:34998600-35008000	Weak transcription	Brain Angular Gyrus	brain
22	chr6:34999000-35005600	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr6:34999000-35008600	Weak transcription	Primary B cells from cord blood	blood
24	chr6:34999400-35007400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr6:34999800-35007400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:34999800-35014600	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr6:35000200-35005600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr6:35000600-35008200	Weak transcription	HepG2	liver
29	chr6:35001000-35005600	Genic enhancers	HSMMtube	muscle
30	chr6:35001000-35005800	Enhancers	Aorta	Aorta
31	chr6:35001400-35005800	Enhancers	Right Ventricle	heart
32	chr6:35001600-35005400	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr6:35001600-35006000	Enhancers	Right Atrium	heart
34	chr6:35001800-35006400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr6:35002000-35005200	Enhancers	GM12878-XiMat	blood
36	chr6:35002000-35005400	Enhancers	Duodenum Mucosa	Duodenum
37	chr6:35002000-35006200	Enhancers	Primary hematopoietic stem cells	blood
38	chr6:35002200-35006200	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr6:35002200-35006200	Genic enhancers	Fetal Muscle Leg	muscle
40	chr6:35002200-35006400	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr6:35002600-35005800	Enhancers	Psoas Muscle	Psoas
42	chr6:35002800-35005200	Weak transcription	Placenta	Placenta
43	chr6:35002800-35005400	Genic enhancers	Fetal Stomach	stomach
44	chr6:35002800-35006200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr6:35002800-35006200	Enhancers	Colon Smooth Muscle	Colon
46	chr6:35003000-35005400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr6:35003000-35005600	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr6:35003000-35005600	Weak transcription	NHDF-Ad	bronchial
49	chr6:35003000-35005800	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr6:35003000-35006800	Enhancers	Rectal Smooth Muscle	rectum

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