Variant report

Variant	rs13211366
Chromosome Location	chr6:15333415-15333416
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15297995..15299738-chr6:15332305..15334049,2	K562	blood:
2	chr6:15241940..15245497-chr6:15330260..15333858,3	K562	blood:

Variant related genes	Relation type
ENSG00000271888	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13193457	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34870280	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34960211	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35192506	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35250158	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35870623	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6935676	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71533644	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71551047	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7740387	0.84[ASN][1000 genomes]
rs7753636	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7763132	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1030558	chr6:15234675-15449137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv538142	chr6:15243960-15404893	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv949448	chr6:15279490-15449441	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv1025512	chr6:15291551-15452395	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv538143	chr6:15291551-15452395	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv538144	chr6:15310696-15364984	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15319400-15335800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:15323800-15337000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr6:15324800-15339800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:15327800-15333800	Weak transcription	Fetal Brain Female	brain
5	chr6:15327800-15335600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:15327800-15337200	Weak transcription	Pancreas	Pancrea
7	chr6:15327800-15375800	Weak transcription	Aorta	Aorta
8	chr6:15328000-15337400	Weak transcription	Stomach Mucosa	stomach
9	chr6:15328000-15340200	Weak transcription	Esophagus	oesophagus
10	chr6:15328000-15342000	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr6:15328200-15340800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr6:15328600-15334400	Enhancers	Fetal Lung	lung
13	chr6:15328600-15334600	Enhancers	Brain Germinal Matrix	brain
14	chr6:15329000-15333600	Enhancers	Fetal Muscle Leg	muscle
15	chr6:15329200-15334800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr6:15329200-15335400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:15329200-15341000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr6:15329800-15343600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr6:15330000-15333800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:15330000-15340400	Weak transcription	Fetal Intestine Small	intestine
21	chr6:15330200-15335800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr6:15330200-15337200	Weak transcription	Brain Angular Gyrus	brain
23	chr6:15330600-15337000	Weak transcription	Adipose Nuclei	Adipose
24	chr6:15330600-15337000	Weak transcription	Fetal Heart	heart
25	chr6:15330600-15337000	Weak transcription	Right Atrium	heart
26	chr6:15330600-15340200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr6:15330600-15340400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr6:15330800-15335400	Weak transcription	Right Ventricle	heart
29	chr6:15330800-15337000	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr6:15330800-15348800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr6:15331000-15336200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr6:15331200-15339200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr6:15331400-15333600	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr6:15331400-15336600	Weak transcription	Brain Substantia Nigra	brain
35	chr6:15331400-15336600	Weak transcription	Colon Smooth Muscle	Colon
36	chr6:15331400-15337000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr6:15331400-15340800	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr6:15331400-15341600	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr6:15331600-15333600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr6:15331600-15334200	Weak transcription	K562	blood
41	chr6:15331600-15334400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr6:15331600-15335600	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr6:15331600-15337000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr6:15331600-15338600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr6:15331600-15345400	Weak transcription	Ovary	ovary
46	chr6:15331600-15346000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr6:15331600-15347000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr6:15331800-15333600	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr6:15331800-15337400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr6:15331800-15339400	Weak transcription	Dnd41	blood

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