Variant report

Variant	rs13211591
Chromosome Location	chr6:165763264-165763265
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11753599	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1333493	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1740809	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1740813	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17784909	0.89[CEU][hapmap];0.85[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3799145	0.87[EUR][1000 genomes]
rs4588664	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67154013	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71571406	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71571409	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73026296	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73028216	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9459375	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432982	chr6:165528589-165835589	Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv605245	chr6:165542686-165845903	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv1031648	chr6:165544569-165841029	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv432983	chr6:165554403-165851585	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	esv3417270	chr6:165682773-166023032	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv886928	chr6:165722345-166197889	Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13211591	PDE10A	cis	parietal	SCAN

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165744000-165769000	Weak transcription	Ovary	ovary
2	chr6:165744800-165763600	Weak transcription	Brain Anterior Caudate	brain
3	chr6:165744800-165801200	Weak transcription	Hela-S3	cervix
4	chr6:165745200-165770000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:165745600-165802800	Weak transcription	Fetal Heart	heart
6	chr6:165747400-165802600	Weak transcription	HSMMtube	muscle
7	chr6:165747600-165853000	Weak transcription	A549	lung
8	chr6:165749200-165769800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr6:165749600-165763400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:165749800-165775000	Weak transcription	Fetal Lung	lung
11	chr6:165754600-165764800	Weak transcription	Fetal Brain Male	brain
12	chr6:165761800-165763400	Strong transcription	Left Ventricle	heart
13	chr6:165762400-165763400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:165762600-165763800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr6:165762600-165765200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:165762600-165766600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:165762800-165763800	Strong transcription	Right Ventricle	heart
18	chr6:165763000-165763800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
19	chr6:165763000-165763800	ZNF genes & repeats	Fetal Brain Female	brain
20	chr6:165763000-165764200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:165763000-165764200	ZNF genes & repeats	Brain Germinal Matrix	brain
22	chr6:165763200-165763600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:165763200-165763800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:165763200-165763800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:165763200-165763800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
26	chr6:165763200-165763800	ZNF genes & repeats	Fetal Stomach	stomach
27	chr6:165763200-165763800	ZNF genes & repeats	HSMM	muscle
28	chr6:165763200-165764200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:165763200-165764200	ZNF genes & repeats	Fetal Muscle Leg	muscle
30	chr6:165763200-165764400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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