Variant report

Variant	rs13212564
Chromosome Location	chr6:145020304-145020305
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs35290244	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1032838	chr6:144978504-145110121	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1021098	chr6:145017386-145106441	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144981200-145031000	Weak transcription	Placenta	Placenta
2	chr6:144983000-145024600	Weak transcription	Fetal Kidney	kidney
3	chr6:144996600-145052400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr6:144999400-145025400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:145000800-145025400	Weak transcription	HSMM	muscle
6	chr6:145004400-145047000	Weak transcription	HSMMtube	muscle
7	chr6:145005000-145031000	Weak transcription	HUVEC	blood vessel
8	chr6:145008400-145021200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:145009000-145029600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:145009000-145047000	Weak transcription	Esophagus	oesophagus
11	chr6:145010400-145029600	Weak transcription	Aorta	Aorta
12	chr6:145010600-145047000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr6:145010800-145031000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:145010800-145031400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr6:145011000-145027800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr6:145011000-145052600	Weak transcription	Ovary	ovary
17	chr6:145011200-145029600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:145011200-145035200	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr6:145011600-145021200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr6:145011600-145023000	Weak transcription	Fetal Heart	heart
21	chr6:145011800-145031000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:145011800-145065600	Weak transcription	Pancreas	Pancrea
23	chr6:145011800-145090200	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr6:145011800-145096600	Weak transcription	Thymus	Thymus
25	chr6:145012000-145020600	Weak transcription	Dnd41	blood
26	chr6:145012000-145021400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr6:145012000-145026200	Weak transcription	Left Ventricle	heart
28	chr6:145012000-145029400	Weak transcription	Lung	lung
29	chr6:145012000-145036600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:145012000-145039200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:145012000-145047000	Weak transcription	Gastric	stomach
32	chr6:145012000-145055600	Weak transcription	Spleen	Spleen
33	chr6:145012400-145021200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr6:145012400-145053000	Weak transcription	Fetal Stomach	stomach
35	chr6:145012800-145023200	Weak transcription	Fetal Thymus	thymus
36	chr6:145013400-145022400	Weak transcription	Primary hematopoietic stem cells	blood
37	chr6:145013600-145021000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr6:145013600-145021200	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr6:145013600-145021200	Weak transcription	Primary B cells from peripheral blood	blood
40	chr6:145013600-145023000	Weak transcription	Adipose Nuclei	Adipose
41	chr6:145013800-145031200	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr6:145014200-145021200	Weak transcription	Fetal Muscle Trunk	muscle
43	chr6:145014200-145033600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr6:145014200-145047000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr6:145017400-145021200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr6:145017600-145029800	Weak transcription	GM12878-XiMat	blood
47	chr6:145017800-145021200	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr6:145017800-145021400	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr6:145018000-145021200	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr6:145018200-145021200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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