Variant report

Variant	rs13212604
Chromosome Location	chr6:34023274-34023275
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:34022571..34024055-chr6:34122245..34123197,6	MCF-7	breast:
2	chr6:33736439..33736983-chr6:34022692..34023404,3	K562	blood:
3	chr6:33739026..33739542-chr6:34022697..34023340,2	K562	blood:
4	chr6:33935558..33936417-chr6:34023156..34023663,2	K562	blood:
5	chr6:34022801..34023337-chr6:34120937..34121532,2	K562	blood:
6	chr6:34023198..34025594-chr6:34206013..34207538,2	K562	blood:
7	chr6:34007682..34010620-chr6:34022223..34024070,2	K562	blood:
8	chr6:34023119..34023631-chr6:34111504..34112235,2	K562	blood:
9	chr6:34023163..34023796-chr6:34111451..34112193,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000137309	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13196437	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13196571	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13207283	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13207952	1.00[EUR][1000 genomes]
rs13208066	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13211063	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13216961	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13219562	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34178580	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34996196	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35878783	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462900	chr6:33932442-34195011	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv602843	chr6:33932442-34195011	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
4	nsv462901	chr6:33953646-34050917	ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
5	nsv602861	chr6:33953646-34050917	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34002800-34027000	Weak transcription	Spleen	Spleen
2	chr6:34016800-34024600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:34020400-34023400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:34020600-34024000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr6:34020800-34025200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr6:34021000-34024200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:34021000-34025200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:34021800-34023800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:34021800-34024000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:34022000-34023600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:34022400-34024800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr6:34022800-34024000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr6:34023000-34023400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:34023000-34025000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:34023000-34025000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:34023000-34025200	Enhancers	H1 Cell Line	embryonic stem cell
17	chr6:34023200-34023400	Enhancers	Esophagus	oesophagus
18	chr6:34023200-34023400	Enhancers	K562	blood
19	chr6:34023200-34024000	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr6:34023200-34024200	Bivalent Enhancer	Fetal Stomach	stomach
21	chr6:34023200-34024200	Weak transcription	Gastric	stomach
22	chr6:34023200-34025000	Enhancers	Placenta	Placenta

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