Variant report

Variant	rs1321270
Chromosome Location	chr6:132466782-132466783
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000197594	Chromatin interaction
ENSG00000227220	Chromatin interaction
ENSG00000079931	Chromatin interaction
ENSG00000118523	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11154664	0.82[JPT][hapmap]
rs1321265	0.82[JPT][hapmap]
rs1321267	0.87[CHB][hapmap];0.89[CHD][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs2064086	0.82[JPT][hapmap]
rs4895929	0.82[JPT][hapmap]
rs6909982	0.82[JPT][hapmap]
rs9483383	0.82[JPT][hapmap]
rs9483385	0.82[JPT][hapmap]
rs9483386	0.82[JPT][hapmap]
rs9483387	0.82[JPT][hapmap]
rs9483388	0.81[JPT][hapmap]
rs9493180	0.82[JPT][hapmap]
rs9493185	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1321270	SGK1	cis	parietal	SCAN
rs1321270	ARHGAP18	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132459600-132494800	Weak transcription	Primary B cells from cord blood	blood
2	chr6:132464600-132468200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:132464600-132468200	Weak transcription	HSMMtube	muscle
4	chr6:132464800-132467200	Weak transcription	Osteobl	bone
5	chr6:132465000-132467800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:132466000-132467200	Weak transcription	HUVEC	blood vessel
7	chr6:132466400-132466800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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