Variant report

Variant	rs13213956
Chromosome Location	chr6:132405654-132405655
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA2	chr6:132405411-132406648	HUVEC	blood vessel:	n/a	chr6:132406153-132406167 chr6:132406181-132406191 chr6:132405940-132405950
2	EP300	chr6:132405614-132406693	SK-N-SH	brain:	n/a	chr6:132405938-132405952 chr6:132405942-132405951
3	FOXM1	chr6:132405578-132406776	SK-N-SH	brain:	n/a	n/a
4	EP300	chr6:132405621-132406813	SK-N-SH	brain:	n/a	chr6:132405938-132405952 chr6:132405942-132405951
5	POLR2A	chr6:132405480-132405669	ProgFib	skin:	n/a	n/a
6	GATA3	chr6:132405616-132407448	SK-N-SH	brain:	n/a	chr6:132407106-132407115 chr6:132407106-132407115 chr6:132406181-132406191 chr6:132407106-132407116 chr6:132405940-132405950

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132269655-132282174..6:132402790-132406656	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000236166	TF binding region
ENSG00000118523	Chromatin interaction
ENSG00000227220	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132396000-132406200	Weak transcription	Aorta	Aorta
2	chr6:132402400-132406400	Weak transcription	Ovary	ovary
3	chr6:132403000-132406000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:132403400-132406200	Enhancers	HUVEC	blood vessel
5	chr6:132403400-132406400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:132403800-132406200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:132404000-132405800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:132404000-132406400	Enhancers	HSMMtube	muscle
9	chr6:132404000-132406400	Enhancers	Osteobl	bone
10	chr6:132404000-132410400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:132404200-132406200	Enhancers	Fetal Heart	heart
12	chr6:132404600-132406200	Enhancers	NH-A	brain
13	chr6:132404600-132407600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:132405000-132406200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:132405000-132406600	Enhancers	NHLF	lung
16	chr6:132405000-132407000	Enhancers	HMEC	breast
17	chr6:132405000-132407200	Enhancers	Placenta	Placenta
18	chr6:132405000-132407600	Enhancers	NHEK	skin
19	chr6:132405000-132408400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:132405200-132406200	Enhancers	HSMM	muscle
21	chr6:132405200-132407200	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr6:132405400-132405800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:132405400-132406000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:132405400-132406200	Enhancers	Colon Smooth Muscle	Colon
25	chr6:132405400-132406200	Enhancers	Stomach Smooth Muscle	stomach
26	chr6:132405400-132406200	Enhancers	GM12878-XiMat	blood
27	chr6:132405400-132406200	Enhancers	NHDF-Ad	bronchial
28	chr6:132405400-132406600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:132405400-132407200	Enhancers	Fetal Muscle Leg	muscle
30	chr6:132405400-132407200	Enhancers	Right Atrium	heart
31	chr6:132405400-132407600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:132405600-132405800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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