Variant report

Variant	rs13215304
Chromosome Location	chr6:149699333-149699334
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149683181..149685215-chr6:149697904..149699618,2	MCF-7	breast:
2	chr6:149698800..149699364-chr8:109157847..109158643,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs34522908	1.00[ASN][1000 genomes]
rs426133	1.00[ASN][1000 genomes]
rs71568272	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024106	chr6:149622349-149745053	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv522875	chr6:149643709-149762537	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149682600-149709200	Weak transcription	Psoas Muscle	Psoas
2	chr6:149683600-149699400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:149685200-149699400	Weak transcription	HMEC	breast
4	chr6:149685600-149699400	Weak transcription	Brain Angular Gyrus	brain
5	chr6:149685600-149699400	Weak transcription	Fetal Intestine Small	intestine
6	chr6:149685800-149699600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr6:149686000-149709000	Weak transcription	Stomach Mucosa	stomach
8	chr6:149687800-149726400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:149691800-149699600	Weak transcription	NHDF-Ad	bronchial
10	chr6:149692600-149699400	Weak transcription	Pancreas	Pancrea
11	chr6:149692600-149699800	Weak transcription	Small Intestine	intestine
12	chr6:149692600-149702800	Strong transcription	Fetal Thymus	thymus
13	chr6:149695200-149699400	Weak transcription	Fetal Heart	heart
14	chr6:149695400-149699400	Weak transcription	NH-A	brain
15	chr6:149695400-149709600	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr6:149697200-149705400	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr6:149697400-149706400	Strong transcription	Dnd41	blood
18	chr6:149697400-149708200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:149697600-149709000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr6:149697600-149713600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:149698400-149709600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:149698600-149703600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:149698800-149701000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:149698800-149703000	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr6:149698800-149703200	Strong transcription	HSMM	muscle
26	chr6:149698800-149703400	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr6:149698800-149703400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:149698800-149703800	Strong transcription	Primary neutrophils fromperipheralblood	blood
29	chr6:149698800-149705200	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr6:149698800-149705200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:149698800-149705800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
32	chr6:149698800-149707600	Strong transcription	Cortex derived primary cultured neurospheres	brain
33	chr6:149699000-149699600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr6:149699000-149700000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr6:149699000-149700600	ZNF genes & repeats	GM12878-XiMat	blood
36	chr6:149699000-149701400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr6:149699000-149702400	Strong transcription	Fetal Brain Female	brain
38	chr6:149699000-149703200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
39	chr6:149699000-149703200	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr6:149699000-149703400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
41	chr6:149699000-149703400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr6:149699000-149703400	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr6:149699000-149703400	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr6:149699000-149703400	Strong transcription	Adipose Nuclei	Adipose
45	chr6:149699000-149704000	Strong transcription	HepG2	liver
46	chr6:149699000-149704800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
47	chr6:149699000-149704800	Strong transcription	Osteobl	bone
48	chr6:149699000-149705400	Strong transcription	Primary T cells from cord blood	blood
49	chr6:149699000-149706800	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr6:149699000-149707000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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