Variant report
| Variant | rs13217748 |
|---|---|
| Chromosome Location | chr2:56058156-56058157 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs11752497 | 0.81[AFR][1000 genomes] |
| rs11755475 | 0.82[AFR][1000 genomes] |
| rs11755483 | 0.82[AFR][1000 genomes] |
| rs11757064 | 0.81[AFR][1000 genomes] |
| rs11757076 | 0.81[AFR][1000 genomes] |
| rs11757821 | 0.81[AFR][1000 genomes] |
| rs12661285 | 0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12662514 | 0.81[AFR][1000 genomes] |
| rs13203894 | 0.81[AFR][1000 genomes] |
| rs13216872 | 0.81[AFR][1000 genomes] |
| rs13219793 | 0.81[AFR][1000 genomes] |
| rs13219816 | 0.81[AFR][1000 genomes] |
| rs13219965 | 0.81[AFR][1000 genomes] |
| rs13220122 | 0.81[AFR][1000 genomes] |
| rs1596427 | 0.81[AFR][1000 genomes] |
| rs34045818 | 0.81[AFR][1000 genomes] |
| rs34583708 | 0.81[AFR][1000 genomes] |
| rs35716568 | 0.81[AFR][1000 genomes] |
| rs35829467 | 0.81[AFR][1000 genomes] |
| rs55668248 | 0.81[AFR][1000 genomes] |
| rs56331944 | 0.81[AFR][1000 genomes] |
| rs62424103 | 0.82[AFR][1000 genomes] |
| rs62424145 | 0.84[AFR][1000 genomes] |
| rs62424146 | 0.81[AFR][1000 genomes] |
| rs62425770 | 0.81[AFR][1000 genomes] |
| rs62425771 | 0.81[AFR][1000 genomes] |
| rs62425776 | 0.81[AFR][1000 genomes] |
| rs71566995 | 0.81[AFR][1000 genomes] |
| rs7742728 | 0.81[AFR][1000 genomes] |
| rs7742869 | 0.81[AFR][1000 genomes] |
| rs7760674 | 0.81[AFR][1000 genomes] |
| rs7760771 | 0.81[AFR][1000 genomes] |
| rs7760817 | 0.81[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531374 | chr2:55653723-56299784 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 56 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:56055000-56066000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
