Variant report

Variant	rs13217860
Chromosome Location	chr6:133194220-133194221
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF2	chr6:133193931-133194492	GM12878	blood:	n/a	n/a
2	BHLHE40	chr6:133194025-133194472	GM12878	blood:	n/a	n/a
3	IRF4	chr6:133194123-133194479	GM12878	blood:	n/a	n/a
4	ATF2	chr6:133194006-133194485	GM12878	blood:	n/a	n/a
5	RELA	chr6:133194072-133194461	GM12878	blood:	n/a	n/a
6	ZNF143	chr6:133194046-133194348	GM12878	blood:	n/a	n/a
7	FOXM1	chr6:133194009-133194448	GM12878	blood:	n/a	n/a
8	BATF	chr6:133194097-133194391	GM12878	blood:	n/a	n/a
9	NFIC	chr6:133194000-133194526	GM12878	blood:	n/a	n/a
10	CREB1	chr6:133194018-133194464	GM12878	blood:	n/a	n/a
11	POU2F2	chr6:133193981-133194502	GM12878	blood:	n/a	n/a
12	RUNX3	chr6:133193998-133194520	GM12878	blood:	n/a	chr6:133194237-133194254
13	MEF2A	chr6:133194058-133194400	GM12878	blood:	n/a	n/a
14	EBF1	chr6:133194100-133194610	GM12878	blood:	n/a	n/a
15	POU2F2	chr6:133194035-133194425	GM12891	blood:	n/a	n/a
16	REST	chr6:133194148-133194284	GM12878	blood:	n/a	chr6:133194202-133194222
17	BCL11A	chr6:133194142-133194427	GM12878	blood:	n/a	n/a
18	MEF2A	chr6:133193941-133194406	GM12878	blood:	n/a	n/a
19	SP1	chr6:133194069-133194419	GM12878	blood:	n/a	n/a
20	BCL3	chr6:133194053-133194422	GM12878	blood:	n/a	n/a
21	BCL11A	chr6:133194064-133194445	GM12878	blood:	n/a	n/a
22	EP300	chr6:133194077-133194520	GM12878	blood:	n/a	chr6:133194317-133194331
23	SREBP1	chr6:133193777-133194776	GM12878	blood:	n/a	n/a
24	IRF4	chr6:133194087-133194491	GM12878	blood:	n/a	n/a
25	EP300	chr6:133194083-133194505	GM12878	blood:	n/a	chr6:133194317-133194331
26	BCLAF1	chr6:133193917-133194525	GM12878	blood:	n/a	n/a
27	TBL1XR1	chr6:133194037-133194482	GM12878	blood:	n/a	n/a
28	SPI1	chr6:133194098-133194368	GM12891	blood:	n/a	n/a
29	BATF	chr6:133194104-133194445	GM12878	blood:	n/a	n/a
30	MTA3	chr6:133194048-133194543	GM12878	blood:	n/a	n/a
31	PAX5	chr6:133194138-133194377	GM12878	blood:	n/a	n/a
32	SP1	chr6:133194101-133194371	GM12878	blood:	n/a	n/a
33	PAX5	chr6:133194014-133194582	GM12878	blood:	n/a	n/a
34	POU2F2	chr6:133194099-133194412	GM12891	blood:	n/a	n/a
35	POU2F2	chr6:133194076-133194452	GM12878	blood:	n/a	n/a
36	NFIC	chr6:133193973-133194484	GM12878	blood:	n/a	n/a
37	CREB1	chr6:133194098-133194491	GM12878	blood:	n/a	n/a
38	SPI1	chr6:133194042-133194367	GM12878	blood:	n/a	n/a
39	RUNX3	chr6:133193968-133194528	GM12878	blood:	n/a	chr6:133194237-133194254
40	MEF2C	chr6:133193998-133194356	GM12878	blood:	n/a	n/a
41	RCOR1	chr6:133194087-133194453	GM12878	blood:	n/a	n/a
42	WRNIP1	chr6:133194123-133194349	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133193166..133197138-chr6:133198506..133201080,4	K562	blood:

Variant related genes	Relation type
HMGB1P13	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
3	nsv869855	chr6:133190265-133244259	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133193400-133194800	Enhancers	GM12878-XiMat	blood
2	chr6:133193800-133194600	Enhancers	Primary B cells from peripheral blood	blood
3	chr6:133194200-133194600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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