Variant report

Variant	rs13218285
Chromosome Location	chr6:24930162-24930163
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24929367..24931167-chr6:24936238..24937978,2	MCF-7	breast:
2	chr6:24928799..24930650-chr6:24931112..24934002,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13199679	0.87[ASN][1000 genomes]
rs13202601	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34503369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35129954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35398163	0.85[ASN][1000 genomes]
rs56850465	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71555170	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71555172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73731449	0.89[ASN][1000 genomes]
rs73731451	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1019504	chr6:24869174-24994758	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv883482	chr6:24926730-25035920	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	esv3442629	chr6:24930029-24930251	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24919200-24930600	Weak transcription	Gastric	stomach
2	chr6:24920600-24932000	Weak transcription	Fetal Kidney	kidney
3	chr6:24924600-24930600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:24924600-24930600	Weak transcription	Spleen	Spleen
5	chr6:24924600-24930800	Weak transcription	Brain Germinal Matrix	brain
6	chr6:24925000-24930800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:24925400-24930600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr6:24925600-24930600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:24925600-24930600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:24925600-24931000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:24925600-24931000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr6:24925600-24931800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:24926200-24930800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr6:24926800-24931600	Weak transcription	Stomach Mucosa	stomach
15	chr6:24926800-24934400	Transcr. at gene 5' and 3'	Primary B cells from cord blood	blood
16	chr6:24927000-24930600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:24927000-24930600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr6:24927000-24930800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr6:24927000-24931600	Weak transcription	Fetal Intestine Small	intestine
20	chr6:24927200-24933600	Transcr. at gene 5' and 3'	Primary T cells fromperipheralblood	blood
21	chr6:24927400-24931800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
22	chr6:24927400-24932200	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
23	chr6:24927600-24931600	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr6:24927600-24932400	Transcr. at gene 5' and 3'	Primary T killer memory cells from peripheral blood	blood
25	chr6:24927800-24930600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr6:24927800-24931400	Enhancers	Osteobl	bone
27	chr6:24927800-24932800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:24927800-24933200	Enhancers	HSMM	muscle
29	chr6:24927800-24934400	Enhancers	HSMMtube	muscle
30	chr6:24928000-24930600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:24928000-24931600	Genic enhancers	Primary monocytes fromperipheralblood	blood
32	chr6:24928000-24933400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:24928000-24934200	Enhancers	Fetal Lung	lung
34	chr6:24928200-24930800	Enhancers	Fetal Thymus	thymus
35	chr6:24928200-24931800	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
36	chr6:24928200-24933000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr6:24928400-24930600	Weak transcription	Stomach Smooth Muscle	stomach
38	chr6:24928400-24932600	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr6:24928400-24933000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr6:24928400-24933400	Enhancers	Fetal Heart	heart
41	chr6:24928600-24930400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:24928800-24933400	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
43	chr6:24929000-24930200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr6:24929000-24932600	Flanking Active TSS	GM12878-XiMat	blood
45	chr6:24929000-24935200	Transcr. at gene 5' and 3'	Primary B cells from peripheral blood	blood
46	chr6:24929200-24930200	Transcr. at gene 5' and 3'	Primary T helper memory cells from peripheral blood 1	blood
47	chr6:24929200-24930200	Weak transcription	Colon Smooth Muscle	Colon
48	chr6:24929200-24930400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr6:24929200-24930600	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr6:24929200-24931200	Enhancers	NHLF	lung

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