Variant report

Variant	rs13218346
Chromosome Location	chr6:150645920-150645921
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150644840..150646705-chr6:150652961..150654511,2	K562	blood:
2	chr6:150638163..150639671-chr6:150643884..150646332,2	MCF-7	breast:
3	chr6:150642390..150644728-chr6:150645013..150646951,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs34184819	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv5538	chr6:150640370-150652751	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3514391	chr6:150642309-150649007	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3514392	chr6:150642709-150648907	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3514394	chr6:150642716-150648318	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3473571	chr6:150643300-150647937	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv3514389	chr6:150643328-150647919	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3514395	chr6:150643343-150647878	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3473572	chr6:150643351-150647922	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv3473569	chr6:150643370-150647881	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv3514393	chr6:150643373-150647885	ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv3514390	chr6:150643420-150647946	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	esv3473570	chr6:150643421-150647846	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv3514398	chr6:150643431-150647844	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv499767	chr6:150643434-150647842	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	esv3473573	chr6:150643435-150647842	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	esv3514399	chr6:150643435-150647842	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	esv20352	chr6:150643454-150647802	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv514396	chr6:150643715-150646403	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	esv2761044	chr6:150644384-150647013	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150642000-150646200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:150642000-150648200	Weak transcription	Aorta	Aorta
3	chr6:150642000-150648400	Weak transcription	Right Ventricle	heart
4	chr6:150642600-150646400	Enhancers	Fetal Muscle Leg	muscle
5	chr6:150642600-150647400	Enhancers	Psoas Muscle	Psoas
6	chr6:150642800-150646600	Enhancers	Adipose Nuclei	Adipose
7	chr6:150643200-150646200	Enhancers	Lung	lung
8	chr6:150643600-150646800	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr6:150643800-150648400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:150644200-150646400	Enhancers	Fetal Muscle Trunk	muscle
11	chr6:150644200-150646800	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr6:150644800-150646000	Weak transcription	Left Ventricle	heart
13	chr6:150645000-150647800	Weak transcription	K562	blood
14	chr6:150645200-150646400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:150645200-150646800	Enhancers	HMEC	breast
16	chr6:150645200-150647200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:150645400-150647000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:150645600-150646400	Enhancers	Primary hematopoietic stem cells	blood
19	chr6:150645600-150646400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:150645600-150646600	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr6:150645600-150646800	Enhancers	NHEK	skin
22	chr6:150645600-150647200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:150645600-150647600	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr6:150645600-150663000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr6:150645800-150646200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
26	chr6:150645800-150646400	Enhancers	Spleen	Spleen
27	chr6:150645800-150646600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links