Variant report

Variant	rs13218362
Chromosome Location	chr6:145093752-145093753
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:145092621..145095309-chr6:145101462..145105366,3	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13192706	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs13205125	0.82[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13205266	0.82[CEU][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs13213473	0.96[EUR][1000 genomes]
rs13215299	1.00[AFR][1000 genomes]
rs35290244	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1032838	chr6:144978504-145110121	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1021098	chr6:145017386-145106441	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145011800-145096600	Weak transcription	Thymus	Thymus
2	chr6:145040000-145094600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:145040000-145114600	Weak transcription	NHLF	lung
4	chr6:145046000-145122200	Weak transcription	Colonic Mucosa	Colon
5	chr6:145047600-145096600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:145047600-145115000	Weak transcription	Esophagus	oesophagus
7	chr6:145047600-145115000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr6:145049400-145098400	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr6:145054000-145095600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr6:145054400-145100000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr6:145059600-145096600	Weak transcription	Lung	lung
12	chr6:145059600-145097400	Weak transcription	Spleen	Spleen
13	chr6:145059800-145096600	Weak transcription	Fetal Stomach	stomach
14	chr6:145066200-145126200	Weak transcription	Stomach Mucosa	stomach
15	chr6:145067800-145115800	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr6:145068800-145115000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:145069800-145094200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr6:145069800-145101800	Weak transcription	Aorta	Aorta
19	chr6:145070200-145094000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:145070600-145094400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr6:145072200-145101800	Weak transcription	Fetal Intestine Large	intestine
22	chr6:145072600-145094800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr6:145073200-145105400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr6:145074400-145094000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr6:145074600-145094400	Weak transcription	Osteobl	bone
26	chr6:145075000-145108800	Strong transcription	Primary B cells from cord blood	blood
27	chr6:145075600-145094400	Weak transcription	GM12878-XiMat	blood
28	chr6:145076800-145095000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr6:145080000-145115000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr6:145080200-145094200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:145080200-145094400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:145080200-145094600	Weak transcription	HUVEC	blood vessel
33	chr6:145084000-145094200	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr6:145084000-145094400	Weak transcription	Fetal Muscle Trunk	muscle
35	chr6:145084000-145155800	Weak transcription	Right Ventricle	heart
36	chr6:145084200-145101000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr6:145084600-145094400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr6:145085000-145094200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr6:145085200-145094800	Weak transcription	Stomach Smooth Muscle	stomach
40	chr6:145085400-145119000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:145085800-145134800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr6:145086800-145115000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr6:145087400-145115000	Weak transcription	Gastric	stomach
44	chr6:145088000-145102000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr6:145089600-145138400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr6:145090000-145136800	Weak transcription	Fetal Heart	heart
47	chr6:145090200-145096000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr6:145090400-145094400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr6:145090400-145094600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr6:145090400-145115000	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links