Variant report

Variant	rs13218365
Chromosome Location	chr6:24534325-24534326
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24534085..24537392-chr6:24543907..24547453,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KIAA0319-1	chr6:24534020-24535373	NONHSAT108115

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12192905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12192908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12199914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13196003	0.85[EUR][1000 genomes]
rs13204739	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs35999285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36112176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34020	chr6:24481299-24606036	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24496000-24538000	Weak transcription	Esophagus	oesophagus
2	chr6:24496200-24535000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr6:24496200-24536200	Weak transcription	Psoas Muscle	Psoas
4	chr6:24496200-24583000	Weak transcription	Hela-S3	cervix
5	chr6:24507800-24536800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr6:24507800-24539200	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:24509400-24545800	Weak transcription	Small Intestine	intestine
8	chr6:24523000-24537000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:24523600-24536800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr6:24526400-24537000	Weak transcription	Primary B cells from cord blood	blood
11	chr6:24528400-24537800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:24528400-24540800	Strong transcription	Liver	Liver
13	chr6:24528800-24534400	Weak transcription	Fetal Brain Male	brain
14	chr6:24530000-24540800	Strong transcription	Thymus	Thymus
15	chr6:24530200-24535600	Strong transcription	HepG2	liver
16	chr6:24530200-24536000	Strong transcription	Primary T cells from cord blood	blood
17	chr6:24530200-24538200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr6:24530200-24540800	Strong transcription	Fetal Thymus	thymus
19	chr6:24530400-24535600	Strong transcription	Fetal Muscle Leg	muscle
20	chr6:24530400-24538200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:24530600-24535600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:24530600-24535600	Weak transcription	Colon Smooth Muscle	Colon
23	chr6:24530600-24535600	Strong transcription	Dnd41	blood
24	chr6:24530600-24536000	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr6:24530800-24535600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr6:24530800-24535600	Strong transcription	Fetal Intestine Large	intestine
27	chr6:24530800-24535600	Strong transcription	Fetal Intestine Small	intestine
28	chr6:24530800-24535800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr6:24531000-24535600	Strong transcription	Adipose Nuclei	Adipose
30	chr6:24531000-24535600	Strong transcription	Brain Anterior Caudate	brain
31	chr6:24531200-24535800	Weak transcription	Placenta	Placenta
32	chr6:24531400-24536400	Strong transcription	Primary B cells from peripheral blood	blood
33	chr6:24531600-24534800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr6:24531600-24535800	Strong transcription	Fetal Muscle Trunk	muscle
35	chr6:24531800-24535600	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr6:24531800-24535600	Strong transcription	Stomach Smooth Muscle	stomach
37	chr6:24531800-24536000	Weak transcription	Rectal Smooth Muscle	rectum
38	chr6:24532200-24535200	Strong transcription	Brain Germinal Matrix	brain
39	chr6:24532200-24535600	Strong transcription	Ovary	ovary
40	chr6:24532200-24535600	Strong transcription	Skeletal Muscle Male	skeletal muscle
41	chr6:24532200-24535600	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr6:24532200-24536800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr6:24532200-24545000	Weak transcription	K562	blood
44	chr6:24532400-24534800	Strong transcription	Fetal Brain Female	brain
45	chr6:24532400-24535400	Strong transcription	Primary T helper cells PMA-I stimulated	--
46	chr6:24532400-24535400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr6:24532400-24535600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:24532400-24535600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr6:24532400-24535600	Strong transcription	Brain Inferior Temporal Lobe	brain
50	chr6:24532400-24535600	Strong transcription	Duodenum Smooth Muscle	Duodenum

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