Variant report

Variant	rs13219404
Chromosome Location	chr6:143917982-143917983
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143916961..143919434-chr6:143921245..143924950,3	K562	blood:
2	chr6:143917132..143921023-chr6:143928488..143932681,3	K562	blood:

Variant related genes	Relation type
ENSG00000112419	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143895600-143918200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:143899400-143918000	Weak transcription	Spleen	Spleen
3	chr6:143899800-143919200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr6:143900800-143918200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr6:143901200-143918000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:143903400-143918200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr6:143903600-143918600	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr6:143910400-143918200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:143910600-143918000	Weak transcription	Right Atrium	heart
10	chr6:143911200-143929200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:143912800-143918200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:143913000-143918800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr6:143913200-143919000	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr6:143913200-143928400	Weak transcription	Aorta	Aorta
15	chr6:143914800-143919400	Weak transcription	Stomach Mucosa	stomach
16	chr6:143915600-143918400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:143915600-143919000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:143915800-143918200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr6:143916000-143919400	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr6:143916200-143918000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:143916200-143918800	Enhancers	NHDF-Ad	bronchial
22	chr6:143916600-143918200	Weak transcription	Stomach Smooth Muscle	stomach
23	chr6:143916800-143918200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:143917000-143918200	Weak transcription	Hela-S3	cervix
25	chr6:143917000-143920200	Enhancers	Placenta	Placenta
26	chr6:143917000-143973600	Weak transcription	Fetal Intestine Small	intestine
27	chr6:143917200-143918200	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr6:143917200-143918400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr6:143917200-143918400	Enhancers	Ovary	ovary
30	chr6:143917200-143929000	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr6:143917200-143941400	Weak transcription	Fetal Intestine Large	intestine
32	chr6:143917400-143918000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:143917400-143919000	Enhancers	Adipose Nuclei	Adipose
34	chr6:143917600-143918200	Enhancers	Lung	lung
35	chr6:143917600-143918400	Enhancers	Fetal Muscle Leg	muscle
36	chr6:143917800-143918400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr6:143917800-143918400	Enhancers	Left Ventricle	heart

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