Variant report

Variant	rs13220006
Chromosome Location	chr6:113885643-113885644
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv3344043	chr6:113884509-113886407	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113880000-113885800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr6:113880600-113885800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:113882800-113885800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:113884400-113885800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:113884400-113885800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:113884400-113886000	Enhancers	Fetal Muscle Leg	muscle
7	chr6:113884600-113885800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:113885000-113886400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:113885400-113885800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:113885400-113886000	Flanking Active TSS	HepG2	liver
11	chr6:113885400-113886200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr6:113885400-113887000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:113885400-113887000	Flanking Active TSS	NHDF-Ad	bronchial
14	chr6:113885600-113885800	Enhancers	H1 Cell Line	embryonic stem cell
15	chr6:113885600-113885800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:113885600-113885800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:113885600-113885800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:113885600-113885800	Enhancers	Brain Germinal Matrix	brain
19	chr6:113885600-113885800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:113885600-113885800	Active TSS	Colonic Mucosa	Colon
21	chr6:113885600-113885800	Enhancers	Colon Smooth Muscle	Colon
22	chr6:113885600-113885800	Enhancers	Duodenum Mucosa	Duodenum
23	chr6:113885600-113885800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr6:113885600-113885800	Flanking Active TSS	Fetal Heart	heart
25	chr6:113885600-113885800	Enhancers	Fetal Intestine Large	intestine
26	chr6:113885600-113885800	Enhancers	Fetal Kidney	kidney
27	chr6:113885600-113885800	Enhancers	Left Ventricle	heart
28	chr6:113885600-113885800	Enhancers	Ovary	ovary
29	chr6:113885600-113885800	Weak transcription	Pancreas	Pancrea
30	chr6:113885600-113885800	Enhancers	Right Atrium	heart
31	chr6:113885600-113885800	Enhancers	Right Ventricle	heart
32	chr6:113885600-113886000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
33	chr6:113885600-113886000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr6:113885600-113886000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
35	chr6:113885600-113886000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
36	chr6:113885600-113886000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
37	chr6:113885600-113886000	Enhancers	Primary hematopoietic stem cells	blood
38	chr6:113885600-113886000	Enhancers	Liver	Liver
39	chr6:113885600-113886000	Flanking Active TSS	Brain Angular Gyrus	brain
40	chr6:113885600-113886000	Flanking Active TSS	Brain Cingulate Gyrus	brain
41	chr6:113885600-113886000	Flanking Active TSS	Brain Hippocampus Middle	brain
42	chr6:113885600-113886000	Flanking Active TSS	Brain Substantia Nigra	brain
43	chr6:113885600-113886000	Flanking Active TSS	Fetal Brain Male	brain
44	chr6:113885600-113886000	Flanking Active TSS	Rectal Smooth Muscle	rectum
45	chr6:113885600-113886000	Enhancers	Sigmoid Colon	Sigmoid Colon
46	chr6:113885600-113886200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
47	chr6:113885600-113886200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:113885600-113886200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr6:113885600-113886200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
50	chr6:113885600-113886200	Enhancers	Lung	lung

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