Variant report

Variant	rs13220914
Chromosome Location	chr6:69269632-69269633
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13193505	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13197248	0.80[AMR][1000 genomes]
rs13214766	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13219660	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35757165	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1020545	chr6:69119445-69310136	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv830680	chr6:69192214-69351103	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69268800-69269800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:69268800-69270200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr6:69268800-69270400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr6:69268800-69270400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:69268800-69270400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr6:69268800-69271200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:69269200-69269800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:69269200-69269800	Active TSS	Fetal Brain Female	brain
9	chr6:69269200-69270200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr6:69269200-69270400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr6:69269400-69269800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:69269400-69269800	Active TSS	Cortex derived primary cultured neurospheres	brain
13	chr6:69269400-69269800	Active TSS	Brain Germinal Matrix	brain
14	chr6:69269600-69269800	Flanking Active TSS	Brain Hippocampus Middle	brain
15	chr6:69269600-69270000	Flanking Active TSS	Brain Cingulate Gyrus	brain
16	chr6:69269600-69270000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
17	chr6:69269600-69270200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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