Variant report

Variant	rs1322132
Chromosome Location	chr9:14017543-14017544
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1022761	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1322129	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1322130	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13293126	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28412855	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34057664	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35149522	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7018953	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv892593	chr9:13948798-14233159	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13994000-14027000	Weak transcription	Aorta	Aorta
2	chr9:14014000-14022000	Weak transcription	Left Ventricle	heart
3	chr9:14014000-14022000	Weak transcription	Psoas Muscle	Psoas
4	chr9:14014000-14027000	Weak transcription	Right Atrium	heart
5	chr9:14015400-14027000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr9:14016400-14018400	Enhancers	Fetal Heart	heart
7	chr9:14017200-14018200	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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