Variant report

Variant	rs13223390
Chromosome Location	chr7:26656634-26656635
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10226350	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10486466	0.83[EUR][1000 genomes]
rs11763972	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11763987	0.83[EUR][1000 genomes]
rs11766368	0.95[EUR][1000 genomes]
rs11766397	0.92[EUR][1000 genomes]
rs12534493	0.81[EUR][1000 genomes]
rs13223668	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13312103	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1557995	0.90[EUR][1000 genomes]
rs17154033	0.84[EUR][1000 genomes]
rs34458537	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35627390	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35695747	0.84[EUR][1000 genomes]
rs36038319	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs757803	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7805330	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
4	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
5	nsv830929	chr7:26587888-26749735	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1021253	chr7:26653375-26669899	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26649400-26658200	Weak transcription	Spleen	Spleen
2	chr7:26652800-26664400	Weak transcription	Pancreas	Pancrea
3	chr7:26653200-26658200	Weak transcription	Primary B cells from cord blood	blood
4	chr7:26655600-26658400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:26656200-26656800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:26656200-26657400	Weak transcription	Lung	lung
7	chr7:26656200-26666600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr7:26656400-26656800	Enhancers	Fetal Brain Male	brain
9	chr7:26656400-26658000	Weak transcription	K562	blood
10	chr7:26656600-26656800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr7:26656600-26657000	Strong transcription	Stomach Smooth Muscle	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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