Variant report

Variant	rs13224126
Chromosome Location	chr7:145936694-145936695
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 102 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10237336	0.82[JPT][hapmap]
rs10256834	0.82[JPT][hapmap]
rs10263587	0.82[JPT][hapmap]
rs10265805	0.82[JPT][hapmap]
rs10268545	0.82[JPT][hapmap]
rs10277217	0.82[JPT][hapmap]
rs10428910	0.82[JPT][hapmap]
rs10500163	0.82[JPT][hapmap]
rs11520906	0.92[CHD][hapmap];0.82[JPT][hapmap]
rs11974152	0.82[JPT][hapmap]
rs11980028	0.82[JPT][hapmap]
rs12703770	0.82[JPT][hapmap]
rs12703780	0.82[JPT][hapmap]
rs12703781	0.82[JPT][hapmap]
rs12703784	0.82[JPT][hapmap]
rs12703785	0.82[JPT][hapmap]
rs12703786	0.82[JPT][hapmap]
rs12703790	0.82[JPT][hapmap]
rs12703791	0.82[JPT][hapmap]
rs13223353	0.82[JPT][hapmap]
rs13223500	0.82[JPT][hapmap]
rs13224183	0.82[JPT][hapmap]
rs13224771	0.83[CEU][hapmap];0.82[JPT][hapmap]
rs13239694	0.81[CEU][hapmap]
rs13241192	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs13242084	0.83[CEU][hapmap];0.85[CHD][hapmap];0.80[GIH][hapmap];0.82[JPT][hapmap];0.84[TSI][hapmap]
rs13242684	0.83[CEU][hapmap];0.82[JPT][hapmap]
rs13245661	0.83[CEU][hapmap];0.83[CHD][hapmap];0.80[GIH][hapmap];0.82[JPT][hapmap];0.84[TSI][hapmap]
rs1405115	0.82[JPT][hapmap]
rs1464959	0.82[JPT][hapmap]
rs1464961	1.00[JPT][hapmap]
rs1526079	0.83[CEU][hapmap];0.85[CHD][hapmap];0.96[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap]
rs17169989	0.83[CEU][hapmap];0.82[JPT][hapmap]
rs17169990	0.83[CEU][hapmap];0.82[JPT][hapmap]
rs17402725	0.82[JPT][hapmap]
rs17577839	0.82[CEU][hapmap]
rs1917936	0.82[JPT][hapmap]
rs2014200	0.82[JPT][hapmap]
rs2080179	0.82[JPT][hapmap]
rs2080180	0.82[JPT][hapmap]
rs2098288	0.82[JPT][hapmap]
rs2140950	0.82[JPT][hapmap]
rs2430324	0.82[JPT][hapmap]
rs2462826	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2539738	0.82[JPT][hapmap]
rs2539744	0.82[JPT][hapmap]
rs2539745	0.82[JPT][hapmap]
rs2539746	0.82[JPT][hapmap]
rs2539747	0.82[JPT][hapmap]
rs2693307	0.82[JPT][hapmap]
rs28823080	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34948064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4445148	0.82[JPT][hapmap]
rs6464737	0.82[JPT][hapmap]
rs6464739	0.82[JPT][hapmap]
rs6960368	0.82[JPT][hapmap]
rs6960388	0.82[JPT][hapmap]
rs6960982	0.82[JPT][hapmap]
rs6966811	0.82[JPT][hapmap]
rs6972712	0.97[EUR][1000 genomes]
rs7780228	0.82[JPT][hapmap]
rs7785673	0.82[JPT][hapmap]
rs7786007	0.82[JPT][hapmap]
rs7788768	0.82[JPT][hapmap]
rs7789370	0.82[JPT][hapmap]
rs7793060	0.82[JPT][hapmap]
rs7794731	0.82[JPT][hapmap]
rs7795024	0.82[JPT][hapmap]
rs7795190	0.82[JPT][hapmap]
rs7795488	0.82[JPT][hapmap]
rs7798919	0.82[JPT][hapmap]
rs7811486	0.82[JPT][hapmap]
rs7811558	0.82[JPT][hapmap]
rs802532	0.82[JPT][hapmap]
rs802534	0.82[JPT][hapmap]
rs802535	0.82[JPT][hapmap]
rs802538	0.82[JPT][hapmap]
rs802539	0.82[JPT][hapmap]
rs802540	0.82[JPT][hapmap]
rs802542	0.82[JPT][hapmap]
rs802543	0.82[JPT][hapmap]
rs802544	0.82[JPT][hapmap]
rs802546	0.82[JPT][hapmap]
rs802547	0.82[JPT][hapmap]
rs802548	0.82[JPT][hapmap]
rs802550	0.82[JPT][hapmap]
rs802556	0.85[CEU][hapmap];0.82[TSI][hapmap]
rs802557	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs802577	0.82[JPT][hapmap]
rs802580	0.82[JPT][hapmap]
rs940932	0.82[JPT][hapmap]
rs940933	0.82[JPT][hapmap]
rs949953	0.82[JPT][hapmap]
rs959411	0.83[CEU][hapmap];0.82[JPT][hapmap];0.84[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1020950	chr7:145683419-146264304	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1030541	chr7:145883107-146022564	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv889387	chr7:145903862-146239545	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv5992	chr7:145922744-145967420	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv608928	chr7:145928429-145952946	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv533345	chr7:145934546-146134958	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv933622	chr7:145935381-145995971	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13224126	KRBA1	cis	parietal	SCAN
rs13224126	MGAM	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:145912600-145945200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:145918800-145942600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:145922800-145943600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:145931800-145937200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:145931800-145937400	Strong transcription	HUES6 Cell Line	embryonic stem cell
6	chr7:145932000-145936800	Strong transcription	H9 Cell Line	embryonic stem cell
7	chr7:145932000-145937200	Strong transcription	H1 Cell Line	embryonic stem cell
8	chr7:145932000-145937200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:145935600-145937000	Genic enhancers	HUES64 Cell Line	embryonic stem cell
10	chr7:145936600-145936800	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr7:145936600-145938200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr7:145936600-145938400	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr7:145936600-145941400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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