Variant report

Variant	rs13225249
Chromosome Location	chr7:147268836-147268837
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12703926	0.92[AFR][1000 genomes]
rs12703950	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13236486	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35994590	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3915303	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs851827	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147262200-147269000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr7:147267400-147271400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr7:147268000-147271200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr7:147268000-147277400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr7:147268000-147283800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:147268600-147269000	Active TSS	Brain Cingulate Gyrus	brain
7	chr7:147268600-147269200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:147268600-147269200	Active TSS	Brain Inferior Temporal Lobe	brain
9	chr7:147268600-147269800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr7:147268800-147269000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr7:147268800-147269000	Flanking Active TSS	Brain Hippocampus Middle	brain
12	chr7:147268800-147269800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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